Salvelinus fontinalis (brook trout): 129831358
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Entry
129831358 CDS
T11136
Name
(RefSeq) SKI2 subunit of superkiller complex protein-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129831358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129831358
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129831358
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129831358
mRNA degradation factors
3'-5' decay
Ski complex
129831358
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
HTH_23
DUF3516
Motif
Other DBs
NCBI-GeneID:
129831358
NCBI-ProteinID:
XP_055750670
LinkDB
All DBs
Position
32:41374164..41407474
Genome browser
AA seq
1250 aa
AA seq
DB search
MERIDLPSVGPTDLPISLLEMGCSGRFELITHPQPNDQPLPPQSSLPHGLPPTSVSLETE
VEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVHIDSLLHCALSPLHSGISVVRDPTTGML
LDFTEVLLGDTGISAKNSMSLERPPNPNPSESLRGSNTNYPFLPGGMEELTLEQIKKKSE
REEDIDFENGLLTVPPGLKVGMDFIDKDAKTTKGEINLLSLLSTFDDIIDSQPEAEEKEK
CHRSGNAPKLPRTNSLEDLGIKDSPSTPGTTSTEKKDGGTTKPAEGQEEKKRWAIPINIT
SPCGDFYKRIPNPAFKYPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWVGRI
KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPSGNFQTKGYYAAIDAKKERTS
KHAQSFGTKNSSQNTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLTSMD
LTSSAEKSEIHSFFQKSLRRLRGGDRQLPQILLIRDLLKRGIGVHHSGILPIMKEVIEML
FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD
ATGTVIILCKSGVHDMGDLNVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF
SESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRLTAEALQCAVLGS
VNGLKALSVGRVVVVNNKQHFNALGVILQVSSDSVNRTFTALIICEKGNEEGGGDSPNGS
AFPHLYNTALFTPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQLRFRLDP
PGQAISTATQELLRLAEANPGGAMALDPVNDFQLKSVDVVEGTMRLRVLQDSLKDFSCIH
SPTFSEQFLRVQERICVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQL
KGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHISNTLKEGIE
RVLAVAQRIGELQRDCGITQTVEEFVSQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV
VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatagatctgccctctgtgggccccacagacctccctatatccctgctggag
atgggttgctctggcaggtttgagctcatcacacacccacagcccaatgaccagcccctg
cctccacaaagttcgctccctcatggactccctcccactagtgtgagcctggagacagag
gtagagaagcgctttctacgcgaccctgcctggcttcccatacacgataccgacgctgcc
ttccacaggtttctgaagctggctgagagagatgttcatatagactctcttctccattgt
gccctgtctcctctgcactctggcatctcagtagtcagagatccaacaacaggaatgttg
ttggacttcactgaggtgttactgggggacacaggcatctctgctaagaattctatgtcc
ctggaacgtccaccaaaccctaatccctctgagagcctacgaggaagcaacaccaactac
ccgtttttgcccggtggtatggaggagctgacactggaacaaatcaagaagaaatccgag
cgggaggaggacatagactttgagaacgggttactcacagtgcctcctggactgaaagtt
ggcatggacttcattgacaaagatgccaaaaccacaaagggagaaatcaatctcctgtcc
ctcctgtccacctttgatgacatcatagactcccagcctgaggcagaggagaaagagaaa
tgccacagaagtggaaacgcacccaaactgcccagaaccaacagcctggaagacctgggg
atcaaggactctccctctacacctgggaccacctctacagagaagaaagatggaggaacg
accaaaccagcagagggccaggaggagaagaagagatgggcaatcccaataaacatcacc
tccccctgcggtgacttctacaaacgtatccctaaccctgccttcaagtatccctttgag
ttggacgtgttccagaagcaggcagtgttgaggctggaggcccacgagtctgtgtttgtg
gcagctcacacatcagcaggcaaaacagtggtggcagaatacgccatagcactctcacag
aagcacatgaccaggaccatttacacctcccccatcaaggcgctgtccaatcagaagttc
cgggacttcaagaccacctttggggacgtggggcttctgaccggcgacgtacagctgagt
cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt
tcggaggtcatcagagatttagagtgggtgatctttgacgaggttcactacatcaatgat
gctgagagaggagtggtgtgggaggaggttctgatcatgttacccgaccatgtcagcatt
attcttctgagtgccactgtccccaatgctgtggagttcagtgagtgggtcgggcgcatt
aaaaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactac
ctgtacacaggcaacagcaccaagacccagaaagagatgttcctactgctggacccttcg
ggcaacttccaaaccaaagggtactatgctgctatagatgccaaaaaggaacgcaccagt
aaacacgcacagtcctttgggacgaaaaattcatctcagaacactacacctaatcaggac
cgggcagtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtggtg
gcgttcaccttctccaggacgcgctgcgacgacaacgcccgctctctaacctccatggac
ctcaccagctcggcggagaagagcgagatccactccttcttccagaagagcctgagacgc
ctcaggggaggggaccgccagctgccccagatcctgttgatcagggacctactgaagagg
ggtatcggtgtgcatcacagtggcatcctgccaatcatgaaggaggtcattgagatgctg
ttctcgcgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaac
atgcctgcgaggacagtggtgtttgacagcatacggaaacacgatggcaccggcttcaga
aacctgctgcctggtgagtatatccagatggctggtagagcgggtaggagaggtctggac
gccacaggcactgtcatcatcctctgcaagtcaggggtgcatgacatgggggacctaaat
gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctataccatg
atcctcaacctgctccgtgtggaagccctccgagtcaccgacatgatgaggaggagcttc
tctgagagccacagagacacacaggcccatgagcagcagataggtcagttgaaacagacc
ctgtcctctctccctcctctggacacggagggtcagctgtctgacctactgccgtactac
tacactgtcactgagctacgcctcaccgctgaggcgctgcagtgtgctgttctggggtct
gtgaatgggttgaaagctctttccgtgggacgagtggtagtggtcaacaacaaacagcac
ttcaacgccctcggagtcatcctacaggtttccagtgactcagtgaatcgtacgtttact
gctctcatcatctgtgagaaaggcaacgaggagggaggaggggacagccccaacggcagt
gccttcccccacctctacaacactgccctctttacacctgaaggtccctgcagtcacacg
gtccagaagctgaagctacaggacatctcagccatcacagtcaagaccctgaaggtgatc
cctgaccgaatcatcgacaactacaacaagaggcagcagcttcgcttcaggcttgatcct
ccgggtcaagccatctccacggcaacccaggaactcctgcgattggcggaggccaaccca
ggcggggcgatggcccttgacccagtgaacgacttccagctgaaaagtgtggatgtggtg
gagggcaccatgaggctgcgtgtgctgcaggacagcctcaaagacttcagctgcatccac
tcacccaccttctcagaacagtttctgcgggtgcaggagagaatttgtgttcaggaggag
ctggacaaactgctcttcctcatctcagaccagtccctgtctctactgccagagtaccac
cagagaatcaaggtgctccaatccctgcagtacgtggacagcagtggtgcggtgcagctg
aagggcagggtggcctgccagatcagtagccatgagctgcttctcacagagctactgttt
gagaacgccctgagccccctggcccctgaggagagcgccgccctactgtcctgtctggtc
tttcaacagaagacccaggtggagcctcacatcagcaacacactgaaggagggtattgag
agagtgctggcggtggcccagcgtattggggagctgcagagggactgtgggataacccag
acagtggaagaatttgtgagccagttcaagtttggcctgaccgaggtggtctactgctgg
gccagaggcatgccgtttgcagagattgcccagttaacagacgtccaggagggcacggtg
gtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgccaggcggcccgcatc
gtgggagactcggtcctgggcagcaagatggagaaagcctccctggccatccgcagagac
atcgtgttcaccgcctcactctacacacactga
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