Salvelinus fontinalis (brook trout): 129832142
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Entry
129832142 CDS
T11136
Name
(RefSeq) rab5 GDP/GTP exchange factor-like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
129832142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfon04131
]
129832142
Membrane trafficking [BR:
sfon04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
129832142
Protein recycling
Other Rab GTPase associated proteins
129832142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Rep_N
HCMV_UL139
Motif
Other DBs
NCBI-GeneID:
129832142
NCBI-ProteinID:
XP_055751917
LinkDB
All DBs
Position
33:36197462..36207404
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AA seq
496 aa
AA seq
DB search
MSHRSERRGIHVDQSELLCTKGCGFYGNAAWQGLCSKCWREEYQQTRHKQIQEDHALAER
LQKEEEAVYANNHQGAAQPQPAIATFSKFEERKTKEKSRKVNTMTKFFTPSAKTPPKKES
VPGEALSTPSPSVSRKPLETDRTTREFIDFLKTLKPGREIFKQCRAFTESMAYKRDLGAD
ELSECVQDFYQNLSDRLHTHFKGSSERVESVMDEVERYMMTRLYEEVFCPETTDDEKKDL
AIQKRIRALHWVTIEMLCVPVDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLTCITRCSK
HIFNAINTTKKEAASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMSGEDGYYF
TNLCCAVAFIEKLDGQSLNLSVEEFELYMSGQASPQRPQAATSPACSAAFSQMNESLDLL
TGLGVRQERVMEGARRLESDLIDWRDGVEHKVQDVLERFPLEMHPAASPTASSAIDADNV
ENDHLPSPLQPQLFAG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgagccaccggtcggaacgtcgtgggatccatgtggaccagtcagagctgctgtgtacg
aagggatgtggcttctatggcaatgcggcctggcagggcctctgctccaagtgctggcgg
gaggagtaccaacaaaccagacacaaacagatccaggaggatcatgcactggcagagagg
ttacagaaggaggaggaggcagtgtatgctaacaaccaccagggggcagcccagccccag
cctgccatcgcaaccttcagcaagtttgaagagaggaaaaccaaggagaagtcacgtaaa
gtcaacacgatgactaagtttttcactccctcagcaaagacaccgcccaagaaagaatcc
gtccctggtgaggccctgtcgacccccagcccctcagtgagccgcaagcccttagagacg
gaccgcaccacacgagagttcatcgacttccttaagacactgaaacctggcagggagatc
ttcaaacagtgcagagccttcacagagagcatggcctacaagagggacctgggtgctgat
gagctgtctgagtgcgttcaagacttctaccagaacctttcagaccgcctgcacacacac
ttcaaagggtcgtcggagcgcgtagagagtgtgatggacgaggtagagaggtacatgatg
acacgtctctacgaggaggtcttctgtcctgagaccacagacgatgagaagaaagacctg
gccattcaaaagagaatcagggccttgcattgggtcaccattgagatgctgtgtgtccct
gtggatgaggagattccagaggtgtctgataatgtggtcaaagccatcacagacgtgatc
gagatggactcgaagcgtgtgcccagggacaagctgacctgcatcacacgctgcagtaag
cacatcttcaatgccatcaataccaccaagaaggaggcggcatctgctgatgacttcctg
cccaccctcatctacatcgtcctgaaggccaaccctccgcgactgcagtccaacatccag
tacatcacccgcttctgtaaccctagccgcctcatgagcggagaagacgggtactacttt
accaacctgtgctgtgcggtggccttcatagagaagctggatggccagtctctgaacctg
agcgttgaggagtttgagctctacatgtcaggccaggcatctccccagcgtccccaggct
gccacctcccccgcctgtagtgctgctttcagccagatgaacgagagtctggacctactg
acggggctgggcgtgaggcaggaacgcgtcatggagggggctcgccgcctggagagtgac
ctcatcgactggagggatggggtagagcacaaagtgcaggatgtgttggagaggttcccc
ctggaaatgcaccccgccgcttcccccaccgcctcttctgccatagatgctgacaacgtg
gaaaacgaccacctgccttctcctctccaaccccagttgtttgccggctga
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