Salvelinus fontinalis (brook trout): 129832265
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Entry
129832265 CDS
T11136
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129832265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129832265
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129832265
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
129832265
RNA polymerase I system
129832265
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
129832265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129832265
NCBI-ProteinID:
XP_055752169
LinkDB
All DBs
Position
33:complement(40431445..40458557)
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AA seq
1083 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEYDEEEE
EDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKEEAEVSNIDHVVLDEDN
SGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVESYKQTHVKAAID
GIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQ
NTISLKMIPRIDLDRIKARMSMKEWFAKRKKFKRPAQRLFDAEKIRSLGGDVSHDGDFMI
FEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREHNL
QAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKV
IAGRYEGDTGLIVRVEDNFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIV
KVIDGQHSGREGEIHHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFTVG
GFAPRSPSISSPMHPGCGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGYIGV
VKDATESTARMELHSTGQIISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGTGSR
TPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRADDDFEFGYDDE
PSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNSQTPGTPAMYNTEQYSPYTAPSPQGSYQ
PSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYKASPSPSPVGYSPMTPGAPSPGGY
NPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQMGVIRSVTGGMCSVFLQDTEKVV
SISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLGK
LEL
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggataaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaggcagcagaagaggaaggggaagacttggcagatgaggagtatgatgaagaggaggaa
gaggatgatgatgaccgtcccagaaagaaaccaaggcatggaggtttcatcttagatgaa
gctgatgtggatgatgagtatgaagacgaagacccgtgggaggaaggcgctgaggatatt
ttggagaaagaggaagctgaggtgtccaacattgaccatgtggtcctggatgaggacaac
tctggctcccgcaggctgcagaacctctggagagattccagagaagaggccttgggtgaa
tattacatgaggaaatatgccaagcaatcaggaaatgattttcctgggggttctgaggaa
ctgtctgatgacatcacccagcagcagctactccctggcgtcaaggatcctaatctatgg
acggtcaagtgtaagattggagaagagagagcaactgccattgcgttaatgaggaaattc
attgcctatcaattcacagacacgcccctccaaatcaagtcggtagtggctcccgaacat
gtcaaaggttacatctatgtggagtcgtacaagcagactcacgtcaaggctgcaattgac
ggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaaggagatg
acagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcctgggtccga
ctcaagagaggcctctacaaagatgacattgcccaggtggactatgtggagcccagtcag
aacacgatatcactgaagatgattcccaggatagatttagacagaattaaggcccgcatg
agcatgaaagaatggtttgcaaagcggaagaagttcaagagaccagcccagagactcttc
gatgcagaaaagatcaggtcacttggtggggatgtcagccacgatggagacttcatgata
tttgaagctaaccgctacagccgtaaagggttcctcttcaagagctttgccatgtcggct
gtgatcactgaaggcgtgaaacccactctgtcagagctggagaagtttgaggaccagcca
gaaggcattgatctggaggtggtgactgaaaccgcaggtaaggagcgtgagcacaacctc
caggccggggacaatgtggaggtgtgtgaaggggagctgatcaacttgcagggcaagatc
ctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctgaaggatcca
ctggagttcccggcccatgaattgaggaagtacttccgtatgggtgaccacgtcaaggtg
atagcaggccgctacgagggcgacacaggcctcatcgtacgcgtggaggataactttgtc
atcctcttctctgacctcaccatgcacgagttgaaggtcctgccccgggacttgcagctg
tgctctgagacggcgtcaggggtagatgccgggggccagcacgaatggggggagctggtc
caactggacccccagaccgtgggagttattgtcaggctggagagagagacattccaggtc
ctcaacatgcacggcaaggtgctgacggtgcgtcaccaggcagtgaatcggcggaaagac
aaccgctttgctgtggcgctggactctgagcagaacaacattcacgtcaaagacatcgtc
aaggtcatcgacgggcaacactcggggcgtgagggagagatccaccacattttccgcggc
tttgccttcctgcactgtaaaaagctggtggagaacgggggcatgttcgtctgcaagaca
cgccacgtggtgctagccgggggctccaagcctcgagacgtcaccaacttcaccgtggga
ggcttcgctcctaggagtccaagtatcagcagccccatgcatccaggttgtggtggccag
cagcagaggggtggtggaggaggtggacagatggggcgtggccggggcaggagggacaac
gacctgattggacagaccgtccgcatctcccagggaccatacaaggggtatattggagtg
gtgaaggatgccaccgagtcgacagccagaatggagctgcactcgacaggccagatcatc
tctgtggaccgacagcgtctcaccacaatgggagccaagagacatggaggaatgacttcc
acccacggacgcactcccatgtacggttcccagacccccatgtacgggacaggctcccgt
acccccatgtatggctctcagaccccattacatgatgggagccgtacacctcactacggc
tcgcagactccgctgcatgatgggagcaggacgccggggcagagcggagcatgggacccc
agcaaccccaacacaccgtccagggcggacgatgactttgagtttggttatgatgacgag
ccctcgccgtcccctcagggctacgggggcacgcctaacccccagacccctggctaccca
gaggtgccctcaccccaggtcaatccccagtacaactcccagaccccaggcaccccagcc
atgtacaacactgaacagtactcgccgtacactgccccctccccacagggctcgtaccag
cccagccccagtccccagagctaccatcaggtggcccccagcccagtgggctaccagaac
acacactcaccagccagctaccaccccaccccctcacccatggcatacaaggccagtccg
agccccagcccggtaggctacagccccatgacccccggcgccccctcccctggcggctac
aacccccacacccccggctccaacatcgaccagacctcctgtgactgggtcaccaccgac
atcctggtgcgtgttaaggacaccttcctggacagccaggtggttaaccagatgggcgtc
atccgcagtgtcacgggtggcatgtgctccgtcttcctccaggacacagagaaggtggtg
agcatctccagtgaacacctggagcctgtcaccccaactaagaacaacaaggtgaaggtg
attctaggggaggaccgcgaggccacggggatcctactgagtattgacggggacgacggc
atcgtcaggatggagctggatgaccagctgaagattctcaacctccgcttcctgggcaag
ctggagctctga
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integrated database retrieval system
