Salvelinus fontinalis (brook trout): 129832471
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Entry
129832471 CDS
T11136
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03440
Homologous recombination
sfon03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129832471 (brca2)
03460 Fanconi anemia pathway
129832471 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129832471 (brca2)
03036 Chromosome and associated proteins [BR:
sfon03036
]
129832471 (brca2)
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129832471 (brca2)
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
129832471 (brca2)
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
129832471 (brca2)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
129832471 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
129832471 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129832471
NCBI-ProteinID:
XP_055752534
LinkDB
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Position
33:49453551..49488078
Genome browser
AA seq
2778 aa
AA seq
DB search
MDKRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSWDWGDTEKENPSTAISCGQDGSFK
TPLGKCPLDGDMFSTPKIFRQRRPQSPETLTEDALFSPDQGTSATEKMDTSPCLFGKSID
SETPSKSYRTRLHGDSFGLLDTPKPSMQAHSAKRISESLGAQLDPDMSWTSSLNTPVMSP
TIILTKSEEHRTMCPVRIATEEQVMFVRKLFPSAMESGSTMLSPEQNDRPLCQHNGPDSH
LPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEIRSTVAGVLDGAEDVLSIFFSNRSL
ALQRVKTKERIKRKQSGATKEHVPTSTMEHDKVSSERAGEYQHTRETSEPLESRTDMKSG
DLATSQWTPINVPDISGYDMDSFHHEGSSSTKHIIPQDGISETFRDYTGSQQPDRGFSKQ
TVQVESALSRRTLPYTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVKNPLLSVQEKNV
TQMLPASPGTAPRGENQNIKQSETIPNEAEFNHLNKTALDGGKPLVQQKSATEENIVSQA
PTKDPDLDMSQLCRVFAQDFSQVVDYSQPCSKRADAIKNGFSASACRLAMRLRNRKQLNK
LEWGQKHEHLNSGISDEMHISGAQFSNSANTSRMKSTLCDSGFPPSTLSDVTQTESSHVH
PSSEKSYGNQSSRGFETGNNWIISLPPEAIKKPKASLDDLTEENMTDVVTAASEVKGELS
CVTGSQLSTEVKFISPLNIAKRSKQTSVKLNGQVHVQTPRSVNVSVSSHPGSGFKMASNK
KIHFFSANLEKDKDLFKEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLLYTHQR
SVDSQGPLTASQRADVSELCSLLEAADSQFELPQFKPAKLNFYVPDGSPPRQSEKELGPD
FLTGIDFDDSFNSDVEKQSVKMATPDKNTTISHCKEICQVTTTKIKSSGASSSNSTEKPK
EHVIHRRVLYIPSYSSENIAERSFGLLTKTTNKNHLLDMDTNTSGMECESKNLPKLGVGF
KTAGGNAVIVSEKCLSKARALFADFEEKNCAPKCAVKNPEQVETSPVQYRGEVDTNVDSN
VTHFHGPEKKVDLKEPRDEYIDKIKVDFTHSHKHGGGGFQTASGKGVTISAKALQKANAV
FKDCDAMEGSGCASEKLSKTSVVSETGSNNFERNNCGFSTARGKRVDVSAKSLLKARTLL
NDCHELENSKPGKIPSLNAKIPSQNIQQKSDCDFKKPSSKAASISAKIPFTAETPFDGGT
SHDVLGAKGKMLEPENSQTHAKDPLKNGCGFSTASGKRVSVSEGALLKAHALLSECHVDG
EELSKPKKKITVDLHTIQNPTQKNSGFKTATVSEVTVSPKAHEQTKSVFNNCDSNMDSLI
SAEAKQGNIDVKSADGLMNNPGTSYCAFMTAGGKNVQVSEKGILKAKSILNENLDNCTDS
NAIEEAWFSDGRFSLLTEDGTGVKKGARNKSNSSDLNGDEKSCDFSTADGALQKAKSILN
ECDVIENPQPETGHKVHLEKIPKKETHEISHGSTASGKEVFISEKALQEACDDTLASDTD
PHKRSEANRPLKVPTPHINVQRVPVKAVRLEDREVIQTIVGMACQSSSVECQAESSLLHF
ESLGFSGCSVTQRRYFAQEAMDCTKALLEDEDLTDHCPGTPIQANPMSCKGGFEMRSGIV
KRSAEDLGMTDQPPLKRRLLTKFDRTVDCSRRSQLTPAKSSSDGIFKDRRVFKYNVALQP
NVTRPYRANQRCVDTRLNKTEPQKTTSDPTAEDRKPVSSKTAVFVPPFRKNVKLEPQRSS
GLQDKTRAPGVFVSPFRKDNRVTREGPFKPSEDNHSPFISEMPSKTTSVPLPEYNPITDT
GSDNAKESIKEQDPQNIDKTDLGDDGGHCLPVTLGGEDATAEESIADAECLQLARDMQDM
RIKKKKRQTIRPLPGSLYLAKTSGVARLTLREAVGGRHPVQHTHKQLYGYGVHRHVSDIS
SESAEAFRFVCRHFFRREAFVEGCVQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPKL
ISEAWVFNNYRWVVWKRACMERAFPAVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRK
IMERDDTAVKTMVLCVCGVVTKGHNPTRQSWSETKTKTPPGSAVGSKATSSPVGLIWLTD
GWYAIKAQLDVPLTAMLHRGRLAIGGKVMVHGAELVGSQDACSPLEAPDSLMLKIGANGT
RAARWYTRLGFYSNPSPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFRA
GRAEEREARRHGDAKHKAMEILFAKIQAQFEKEDVCGKPRGRRRTLRGRDIETLLDGEEL
YDAVENDPVYLEGRLSKQQREALNSYRRCVGERRQAALQERFRQALESTQEGEGGSCHNR
DVTPIWKLSVADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYKAYKLSTSEGKKRAGN
TSIQLTATKKTQFQNLQASAGWLSERFQAREAVGFRVLLNRDLKPLCGEVDLVGYVISIT
DRQGHSPVVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSSPTPIR
STIPGLYAGELVSFSTNPKEPHLQEAATQLRTLVQGQEHFFRTAEERLSNLVQGSVQCLP
PPPWTPDAKPDARTTMTPQESVRSVGPFTPLNRVVPPPPACSSGGDNKSLKRKRGLEYLC
RVPSPPPLCPLGTMTLLSPSVNKTFNTPRRTETHRILKTPLAPAPQHVHLPQEDEWVEDE
ELVMIDTQALHDGIGIDT
NT seq
8337 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaggaactcactgcaaaagcttccagttgggattggggt
gatacagagaaagagaatcccagcactgcaatatcttgtggacaagatggcagtttcaaa
acaccattggggaaatgtccccttgatggtgatatgttctctaccccgaagattttcagg
cagagaagaccacagtctcctgagacattgacagaagatgcacttttttcccctgatcaa
ggaacctctgcaacagaaaaaatggacacaagcccatgtttatttggaaaatcaatagac
agcgagacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgctt
gacacaccgaaaccctctatgcaggcacactctgccaaacgtatatctgaaagtcttggt
gcacagttagaccctgatatgtcctggaccagttctctcaatacacctgtcatgtcgccc
accatcattttgactaaaagtgaggagcataggactatgtgcccagtaagaattgctacc
gaagagcaggttatgtttgtgcgaaagcttttcccctcggccatggagtctggaagcaca
atgctgtcaccagaacagaatgatagacctctctgtcaacacaatggaccggattcccac
ttgcctggtgtgattgacatctcccctggctttcaagacacgctacctggtgacagtggc
agccattggaaacagactttaccagacgctattgaggacggagaaatccgcagcactgtg
gccggtgtcctagatggagctgaggatgtcctctccatattcttcagcaacagaagtttg
gctctacaaagggtgaagaccaaagagagaatcaaaaggaagcaaagtggcgcaactaag
gaacacgtacctacttctacaatggaacatgacaaagtatccagtgagagagcaggagaa
taccaacacactagggaaacctctgagcctcttgagtccaggactgacatgaagtctggg
gatttggcgacttctcagtggactccaataaatgtacctgacatttcaggctatgatatg
gattcatttcaccatgaggggtcttcctctactaaacacataattccacaagatggcata
agtgaaacattccgtgactacactgggagccagcagccggatcgcggtttctctaagcag
actgtccaggtggagtctgccctttccagaagaacattaccatacaccagccagccagag
ggatctcaattgacagggtctgtagtcgaaagctctctggaacacacctttcccaggaaa
acaaggacatttgtttactgtgtcaaaaatccacttctgtcagtgcaagaaaaaaatgtt
actcagatgttacctgcatcacctggaactgctcccagaggtgaaaatcagaacataaaa
caaagtgaaaccataccaaatgaagcggagttcaatcatcttaacaaaactgccttggat
gggggaaagccgctagttcagcagaaaagtgcaactgaagaaaatattgtttcacaagca
ccgaccaaagaccctgatcttgatatgtcacagctttgcagggtatttgcgcaagatttt
agccaagtcgttgactacagtcaaccatgcagcaaaagagcagatgctattaaaaatggc
ttctctgcatcagcttgtcgcttagcaatgagactaaggaacagaaaacagttgaataaa
ctagaatggggccagaaacatgaacatcttaactctggcatcagtgatgaaatgcatatt
tctggtgctcagtttagcaactctgcaaacacgtctagaatgaagagtacattgtgtgat
agcggcttccccccctccaccctttctgatgtcacacaaacagaatcatcccatgttcac
cctagctctgaaaaaagttatggaaatcagtcatctagagggtttgaaacgggtaacaac
tggattatctctttgcctccagaagcaataaagaaaccaaaagcatcattggatgactta
actgaggaaaatatgactgatgttgttactgctgccagtgaagtgaaaggtgagttgtca
tgtgtgacaggaagccaactgtccacagaagtgaagttcattagtccactcaacattgcc
aaaaggtcaaagcaaaccagcgtaaaattgaatggtcaagttcatgttcagacccctcgg
agcgtcaatgtttcggtttcctcacaccctgggtctggtttcaaaatggcctccaataag
aagatacattttttttcagcaaatctggagaaagacaaggatctgtttaaggagattgag
gatgaaatacctgcagtcaatattcctgagataagccttcctgaggaaggtaacatgtca
tgtggattggagcttgttgatggatctcatttgccacctctactctatacacaccagagg
tctgttgatagccaaggtccgttgacagcctcacagagagctgatgtttcagaattgtgc
agtctcttagaagctgcagacagccaatttgagttaccacagtttaaaccagcaaagctg
aacttctatgtaccagatggtagcccccctcgtcaatctgagaaagaattgggtcctgac
tttctcactggcatagatttcgatgacagtttcaactctgatgttgagaagcaatctgtg
aagatggccacccctgacaaaaatacaactatttctcattgcaaggaaatttgccaagta
acaaccaccaaaattaaatctagtggggcatcatccagcaattcaacagagaaacccaaa
gaacatgttatccacagaagagtactttacattcccagttatagctctgaaaacatagct
gagcgttcctttggtttgttgacaaaaaccacaaacaagaaccatctactcgatatggat
acgaacaccagtggaatggagtgtgaaagcaaaaatctccccaagttgggtgtgggattt
aaaactgctggcggaaatgctgtgatagtttcagagaagtgtctgagcaaagcaagggcc
ttgtttgcagattttgaggaaaaaaactgtgcacccaagtgtgcagtaaaaaatccggaa
caagttgaaacgtcacctgttcaatatagaggcgaagttgatacaaatgttgattcaaat
gtgacacattttcatggccctgaaaagaaagtagatctgaaggaaccacgtgatgaatac
attgacaagattaaagtggactttacacattctcacaaacatgggggtggtggattccag
acagccagtggtaaaggagtgaccatctcggcaaaggcccttcaaaaagcaaatgcagtc
ttcaaagactgtgacgctatggaaggttcaggttgtgcatcagaaaagctgagcaaaaca
agtgttgtatcagagactggcagtaataattttgagagaaacaattgtggcttcagtact
gctcgagggaagagagttgatgtttctgcaaaatctctactgaaggcaaggactctcctg
aatgactgtcatgaattggaaaattctaagccagggaaaatccccagcttgaatgcaaag
ataccaagtcagaatattcagcagaaaagtgactgtgattttaagaaacccagtagtaaa
gcagcctccatatcagcaaagatcccttttacagcagaaactccatttgatggtggcacg
tcacatgatgttctaggggcaaagggcaaaatgctcgaaccagaaaattctcaaacccat
gccaaagatcctttgaaaaatggatgtgggttcagcactgccagtggtaaaagagtgtct
gtgtccgaaggggcactgttgaaagcacatgctcttttgagtgaatgtcatgtagatgga
gaggaactttctaaaccaaagaaaaagatcacagtagatcttcataccattcagaatcca
acacagaagaacagtggatttaagactgcaactgtctcagaagttaccgtatcacctaag
gcccatgagcaaacaaagtctgttttcaacaactgcgattccaatatggacagtttaatc
agtgctgaagcaaagcaagggaatatagacgtaaagtcggcggatggtctgatgaacaat
ccagggacaagctattgtgccttcatgacagctggtggaaagaatgtgcaggtatcagaa
aagggtattttgaaggcgaagagcattctgaatgaaaaccttgataactgcacagactca
aatgccattgaggaggcttggttttcagatggtagattttcgttactcactgaagatggt
acaggtgtcaaaaaaggagcaaggaacaaatcaaattcttctgacctcaacggtgatgaa
aagagctgtgatttcagcactgccgatggagcactccagaaagcaaagtctattctgaac
gaatgtgatgtaattgaaaatccacaacctgagactggccacaaagtgcatctggaaaag
attccaaaaaaggaaacgcatgaaatctctcatggtagcacagccagtgggaaagaggtg
tttatttcagagaaggcacttcaagaagcatgtgatgatacccttgccagtgatactgac
cctcacaaaagatctgaagcaaataggccactgaaggtccctactccccatattaatgtt
cagcgtgtgccggtcaaagcagtccgactggaggaccgcgaagtgatccagaccattgtt
ggaatggcatgtcagtcttcatctgtggaatgtcaagcggagtcttccttgttacatttt
gaatcccttggattcagtggctgctctgtgactcagaggaggtactttgcccaggaggcc
atggattgtaccaaggctcttttagaggacgaagacttgaccgatcattgtcctggaaca
ccaatccaagctaaccccatgtcctgcaaggggggttttgagatgagaagtggaattgtg
aaaaggtcggcagaggatttagggatgacagaccagcctcctctgaaaagaagactcttg
accaaattcgacagaactgtggattgtagtagacggtctcaactcactccagctaaaagc
agttcagatggtatatttaaagacaggagagtcttcaaatataatgtggctcttcaacct
aatgtcaccaggccatatcgcgctaaccagagatgtgtagacacaaggctgaataagacc
gagccacagaagacaacgtcagatccaaccgccgaagaccgtaaaccagttagctccaag
acagctgtatttgtccccccattccggaagaatgtcaagcttgagccacagaggagcagt
ggtcttcaggacaagactagagcacctggtgtgtttgtttccccgtttcggaaagacaac
cgcgtaaccagggagggtccctttaaaccttcagaagataatcattctcccttcatctct
gaaatgccttccaagaccacatctgttccacttcctgagtacaaccccatcactgacact
ggtagtgataacgcaaaggagtccattaaggaacaggacccacaaaatattgacaaaacg
gatctaggcgatgatggtggccattgccttcctgtcaccctaggaggagaggatgccact
gcagaggagtctattgcagatgcagagtgcttgcagctggcccgagacatgcaggacatg
agaatcaagaagaagaagcgacagaccattagacctctccctggcagcctgtacctggcc
aagacatctggggtggccaggctgaccctcagggaggctgttggaggtcggcacccggta
caacacacacacaaacagctgtatggctacggagtgcaccggcatgtttcggatatcagc
agtgagagtgccgaggcgttccgctttgtctgccgacacttcttcagacgcgaggcgttt
gtagaggggtgcgttcagctggccgacgggggttggctcatccctcgcaacgatggaacc
gcagggaaacatgagttccacagagcgttgtgtgacagccctggcgtggaccccaagctg
atcagtgaagcctgggtgttcaacaactaccgctgggtggtgtggaaacgagcctgcatg
gagagggcattcccagcggtgatgggcagcctctgtctcacaccagaacaggtgctccta
caactgaaatacaggtacgacttggaggtggacaacagcaagaggtccgctctaaggaag
atcatggagagagacgacacggcagtcaagaccatggtgctttgtgtatgtggtgttgtc
accaaaggccataacccaacaaggcagagctggagtgagaccaagaccaaaacaccaccc
gggagtgccgtagggtctaaagccacgtcgtcccctgtaggcttgatctggctgacggat
ggctggtacgccatcaaggcccagctggacgtcccactgaccgccatgctccaccggggc
cgcctggcgattggggggaaggtgatggtccacggggccgagctggtgggatctcaggat
gcctgctccccactagaggctcccgactccctcatgctgaagattggggccaacggcacc
agagcggcgcgttggtacaccaggctaggattctacagcaaccctagtccgttcctcctc
cccctctcctccctctacagcaacggaggccccgtgggctgtgtggacattgtggtgctg
aggagctaccctacccagtggatggagaagaagtcggacggagggtttgtgttccgcgca
ggccgtgcagaggagagggaggcgcggcgtcacggagacgccaaacacaaagccatggag
atcctgttcgccaagatccaggcccagtttgagaaggaggacgtttgcggtaaacccaga
ggccggagacggaccctgcgtggtcgagacattgagacactgctggacggggaggagctg
tacgacgcggtggagaatgacccagtttatctggagggccgtctgagtaagcagcaacgg
gaggcgttgaacagctataggcgttgtgtcggtgagaggaggcaagcggcactgcaggag
cggttccgccaggctctggaaagcacccaggagggcgagggcgggagctgtcacaaccga
gacgtgacccccatctggaagctcagcgtcgctgactccagggccaagccgggcagcaat
gcagtgtacctgttgaatatctggcgcccctccatggatctgcagtccttgctgaaggag
ggctgtcgatacaaggcctacaaactatccacgtcggagggcaagaaacgagccggtaac
acctccattcagctcaccgccaccaagaaaacccagttccagaatttacaggcttctgca
gggtggttgtctgagcgtttccaagcccgagaggcggttggctttcgcgttctcctgaac
cgggacttaaagccgctctgtggagaggtggatctggtaggctacgtcatctccatcaca
gacagacaaggtcactctccagtggtgtatctagtggatggctggctggactttgtcaag
gtgcgctgctgcagcagtctggtccagcagggcttggaggaggtggtcaagcctctggct
ctggtggctctcagtaaccttcagctcagagcccatccctcctcccccacccctatccgc
agcaccatccctggcctatacgctggagaactggtctcgttttccaccaaccccaaggag
ccacatctacaggaggctgccactcaactcagaacccttgtccagggccaggaacacttc
ttcaggactgcagaggagaggttatctaacttagtccaggggtctgtccagtgtcttcct
ccgccgccatggactccagatgccaaaccagatgccaggactactatgacaccccaggag
tcagttcgaagcgttggccccttcacccccctgaacagggtcgtcccccctccacccgcc
tgctcctccgggggggacaacaagagcctgaaaagaaagaggggcctggagtacctgtgt
cgtgtcccctctccccctccactctgccccttgggcaccatgaccttactctcgccgtcc
gtcaacaagaccttcaacacccctcgcaggaccgagacccaccggatcctaaagacacct
ctggcccccgctccacagcatgtccacctgccccaagaggatgagtgggtggaggatgaa
gagctggtcatgattgacactcaggccctacacgatggcatagggatagacacgtga
DBGET
integrated database retrieval system
