Salvelinus fontinalis (brook trout): 129832471
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Entry
129832471 CDS
T11136
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03440
Homologous recombination
sfon03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129832471 (brca2)
03460 Fanconi anemia pathway
129832471 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129832471 (brca2)
03036 Chromosome and associated proteins [BR:
sfon03036
]
129832471 (brca2)
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129832471 (brca2)
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
129832471 (brca2)
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
129832471 (brca2)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
129832471 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
129832471 (brca2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA2
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
BRC-2_N
Motif
Other DBs
NCBI-GeneID:
129832471
NCBI-ProteinID:
XP_055752534
LinkDB
All DBs
Position
33:49453551..49488078
Genome browser
AA seq
2778 aa
AA seq
DB search
MDKRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSWDWGDTEKENPSTAISCGQDGSFK
TPLGKCPLDGDMFSTPKIFRQRRPQSPETLTEDALFSPDQGTSATEKMDTSPCLFGKSID
SETPSKSYRTRLHGDSFGLLDTPKPSMQAHSAKRISESLGAQLDPDMSWTSSLNTPVMSP
TIILTKSEEHRTMCPVRIATEEQVMFVRKLFPSAMESGSTMLSPEQNDRPLCQHNGPDSH
LPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEIRSTVAGVLDGAEDVLSIFFSNRSL
ALQRVKTKERIKRKQSGATKEHVPTSTMEHDKVSSERAGEYQHTRETSEPLESRTDMKSG
DLATSQWTPINVPDISGYDMDSFHHEGSSSTKHIIPQDGISETFRDYTGSQQPDRGFSKQ
TVQVESALSRRTLPYTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVKNPLLSVQEKNV
TQMLPASPGTAPRGENQNIKQSETIPNEAEFNHLNKTALDGGKPLVQQKSATEENIVSQA
PTKDPDLDMSQLCRVFAQDFSQVVDYSQPCSKRADAIKNGFSASACRLAMRLRNRKQLNK
LEWGQKHEHLNSGISDEMHISGAQFSNSANTSRMKSTLCDSGFPPSTLSDVTQTESSHVH
PSSEKSYGNQSSRGFETGNNWIISLPPEAIKKPKASLDDLTEENMTDVVTAASEVKGELS
CVTGSQLSTEVKFISPLNIAKRSKQTSVKLNGQVHVQTPRSVNVSVSSHPGSGFKMASNK
KIHFFSANLEKDKDLFKEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLLYTHQR
SVDSQGPLTASQRADVSELCSLLEAADSQFELPQFKPAKLNFYVPDGSPPRQSEKELGPD
FLTGIDFDDSFNSDVEKQSVKMATPDKNTTISHCKEICQVTTTKIKSSGASSSNSTEKPK
EHVIHRRVLYIPSYSSENIAERSFGLLTKTTNKNHLLDMDTNTSGMECESKNLPKLGVGF
KTAGGNAVIVSEKCLSKARALFADFEEKNCAPKCAVKNPEQVETSPVQYRGEVDTNVDSN
VTHFHGPEKKVDLKEPRDEYIDKIKVDFTHSHKHGGGGFQTASGKGVTISAKALQKANAV
FKDCDAMEGSGCASEKLSKTSVVSETGSNNFERNNCGFSTARGKRVDVSAKSLLKARTLL
NDCHELENSKPGKIPSLNAKIPSQNIQQKSDCDFKKPSSKAASISAKIPFTAETPFDGGT
SHDVLGAKGKMLEPENSQTHAKDPLKNGCGFSTASGKRVSVSEGALLKAHALLSECHVDG
EELSKPKKKITVDLHTIQNPTQKNSGFKTATVSEVTVSPKAHEQTKSVFNNCDSNMDSLI
SAEAKQGNIDVKSADGLMNNPGTSYCAFMTAGGKNVQVSEKGILKAKSILNENLDNCTDS
NAIEEAWFSDGRFSLLTEDGTGVKKGARNKSNSSDLNGDEKSCDFSTADGALQKAKSILN
ECDVIENPQPETGHKVHLEKIPKKETHEISHGSTASGKEVFISEKALQEACDDTLASDTD
PHKRSEANRPLKVPTPHINVQRVPVKAVRLEDREVIQTIVGMACQSSSVECQAESSLLHF
ESLGFSGCSVTQRRYFAQEAMDCTKALLEDEDLTDHCPGTPIQANPMSCKGGFEMRSGIV
KRSAEDLGMTDQPPLKRRLLTKFDRTVDCSRRSQLTPAKSSSDGIFKDRRVFKYNVALQP
NVTRPYRANQRCVDTRLNKTEPQKTTSDPTAEDRKPVSSKTAVFVPPFRKNVKLEPQRSS
GLQDKTRAPGVFVSPFRKDNRVTREGPFKPSEDNHSPFISEMPSKTTSVPLPEYNPITDT
GSDNAKESIKEQDPQNIDKTDLGDDGGHCLPVTLGGEDATAEESIADAECLQLARDMQDM
RIKKKKRQTIRPLPGSLYLAKTSGVARLTLREAVGGRHPVQHTHKQLYGYGVHRHVSDIS
SESAEAFRFVCRHFFRREAFVEGCVQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPKL
ISEAWVFNNYRWVVWKRACMERAFPAVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRK
IMERDDTAVKTMVLCVCGVVTKGHNPTRQSWSETKTKTPPGSAVGSKATSSPVGLIWLTD
GWYAIKAQLDVPLTAMLHRGRLAIGGKVMVHGAELVGSQDACSPLEAPDSLMLKIGANGT
RAARWYTRLGFYSNPSPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFRA
GRAEEREARRHGDAKHKAMEILFAKIQAQFEKEDVCGKPRGRRRTLRGRDIETLLDGEEL
YDAVENDPVYLEGRLSKQQREALNSYRRCVGERRQAALQERFRQALESTQEGEGGSCHNR
DVTPIWKLSVADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYKAYKLSTSEGKKRAGN
TSIQLTATKKTQFQNLQASAGWLSERFQAREAVGFRVLLNRDLKPLCGEVDLVGYVISIT
DRQGHSPVVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSSPTPIR
STIPGLYAGELVSFSTNPKEPHLQEAATQLRTLVQGQEHFFRTAEERLSNLVQGSVQCLP
PPPWTPDAKPDARTTMTPQESVRSVGPFTPLNRVVPPPPACSSGGDNKSLKRKRGLEYLC
RVPSPPPLCPLGTMTLLSPSVNKTFNTPRRTETHRILKTPLAPAPQHVHLPQEDEWVEDE
ELVMIDTQALHDGIGIDT
NT seq
8337 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaggaactcactgcaaaagcttccagttgggattggggt
gatacagagaaagagaatcccagcactgcaatatcttgtggacaagatggcagtttcaaa
acaccattggggaaatgtccccttgatggtgatatgttctctaccccgaagattttcagg
cagagaagaccacagtctcctgagacattgacagaagatgcacttttttcccctgatcaa
ggaacctctgcaacagaaaaaatggacacaagcccatgtttatttggaaaatcaatagac
agcgagacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgctt
gacacaccgaaaccctctatgcaggcacactctgccaaacgtatatctgaaagtcttggt
gcacagttagaccctgatatgtcctggaccagttctctcaatacacctgtcatgtcgccc
accatcattttgactaaaagtgaggagcataggactatgtgcccagtaagaattgctacc
gaagagcaggttatgtttgtgcgaaagcttttcccctcggccatggagtctggaagcaca
atgctgtcaccagaacagaatgatagacctctctgtcaacacaatggaccggattcccac
ttgcctggtgtgattgacatctcccctggctttcaagacacgctacctggtgacagtggc
agccattggaaacagactttaccagacgctattgaggacggagaaatccgcagcactgtg
gccggtgtcctagatggagctgaggatgtcctctccatattcttcagcaacagaagtttg
gctctacaaagggtgaagaccaaagagagaatcaaaaggaagcaaagtggcgcaactaag
gaacacgtacctacttctacaatggaacatgacaaagtatccagtgagagagcaggagaa
taccaacacactagggaaacctctgagcctcttgagtccaggactgacatgaagtctggg
gatttggcgacttctcagtggactccaataaatgtacctgacatttcaggctatgatatg
gattcatttcaccatgaggggtcttcctctactaaacacataattccacaagatggcata
agtgaaacattccgtgactacactgggagccagcagccggatcgcggtttctctaagcag
actgtccaggtggagtctgccctttccagaagaacattaccatacaccagccagccagag
ggatctcaattgacagggtctgtagtcgaaagctctctggaacacacctttcccaggaaa
acaaggacatttgtttactgtgtcaaaaatccacttctgtcagtgcaagaaaaaaatgtt
actcagatgttacctgcatcacctggaactgctcccagaggtgaaaatcagaacataaaa
caaagtgaaaccataccaaatgaagcggagttcaatcatcttaacaaaactgccttggat
gggggaaagccgctagttcagcagaaaagtgcaactgaagaaaatattgtttcacaagca
ccgaccaaagaccctgatcttgatatgtcacagctttgcagggtatttgcgcaagatttt
agccaagtcgttgactacagtcaaccatgcagcaaaagagcagatgctattaaaaatggc
ttctctgcatcagcttgtcgcttagcaatgagactaaggaacagaaaacagttgaataaa
ctagaatggggccagaaacatgaacatcttaactctggcatcagtgatgaaatgcatatt
tctggtgctcagtttagcaactctgcaaacacgtctagaatgaagagtacattgtgtgat
agcggcttccccccctccaccctttctgatgtcacacaaacagaatcatcccatgttcac
cctagctctgaaaaaagttatggaaatcagtcatctagagggtttgaaacgggtaacaac
tggattatctctttgcctccagaagcaataaagaaaccaaaagcatcattggatgactta
actgaggaaaatatgactgatgttgttactgctgccagtgaagtgaaaggtgagttgtca
tgtgtgacaggaagccaactgtccacagaagtgaagttcattagtccactcaacattgcc
aaaaggtcaaagcaaaccagcgtaaaattgaatggtcaagttcatgttcagacccctcgg
agcgtcaatgtttcggtttcctcacaccctgggtctggtttcaaaatggcctccaataag
aagatacattttttttcagcaaatctggagaaagacaaggatctgtttaaggagattgag
gatgaaatacctgcagtcaatattcctgagataagccttcctgaggaaggtaacatgtca
tgtggattggagcttgttgatggatctcatttgccacctctactctatacacaccagagg
tctgttgatagccaaggtccgttgacagcctcacagagagctgatgtttcagaattgtgc
agtctcttagaagctgcagacagccaatttgagttaccacagtttaaaccagcaaagctg
aacttctatgtaccagatggtagcccccctcgtcaatctgagaaagaattgggtcctgac
tttctcactggcatagatttcgatgacagtttcaactctgatgttgagaagcaatctgtg
aagatggccacccctgacaaaaatacaactatttctcattgcaaggaaatttgccaagta
acaaccaccaaaattaaatctagtggggcatcatccagcaattcaacagagaaacccaaa
gaacatgttatccacagaagagtactttacattcccagttatagctctgaaaacatagct
gagcgttcctttggtttgttgacaaaaaccacaaacaagaaccatctactcgatatggat
acgaacaccagtggaatggagtgtgaaagcaaaaatctccccaagttgggtgtgggattt
aaaactgctggcggaaatgctgtgatagtttcagagaagtgtctgagcaaagcaagggcc
ttgtttgcagattttgaggaaaaaaactgtgcacccaagtgtgcagtaaaaaatccggaa
caagttgaaacgtcacctgttcaatatagaggcgaagttgatacaaatgttgattcaaat
gtgacacattttcatggccctgaaaagaaagtagatctgaaggaaccacgtgatgaatac
attgacaagattaaagtggactttacacattctcacaaacatgggggtggtggattccag
acagccagtggtaaaggagtgaccatctcggcaaaggcccttcaaaaagcaaatgcagtc
ttcaaagactgtgacgctatggaaggttcaggttgtgcatcagaaaagctgagcaaaaca
agtgttgtatcagagactggcagtaataattttgagagaaacaattgtggcttcagtact
gctcgagggaagagagttgatgtttctgcaaaatctctactgaaggcaaggactctcctg
aatgactgtcatgaattggaaaattctaagccagggaaaatccccagcttgaatgcaaag
ataccaagtcagaatattcagcagaaaagtgactgtgattttaagaaacccagtagtaaa
gcagcctccatatcagcaaagatcccttttacagcagaaactccatttgatggtggcacg
tcacatgatgttctaggggcaaagggcaaaatgctcgaaccagaaaattctcaaacccat
gccaaagatcctttgaaaaatggatgtgggttcagcactgccagtggtaaaagagtgtct
gtgtccgaaggggcactgttgaaagcacatgctcttttgagtgaatgtcatgtagatgga
gaggaactttctaaaccaaagaaaaagatcacagtagatcttcataccattcagaatcca
acacagaagaacagtggatttaagactgcaactgtctcagaagttaccgtatcacctaag
gcccatgagcaaacaaagtctgttttcaacaactgcgattccaatatggacagtttaatc
agtgctgaagcaaagcaagggaatatagacgtaaagtcggcggatggtctgatgaacaat
ccagggacaagctattgtgccttcatgacagctggtggaaagaatgtgcaggtatcagaa
aagggtattttgaaggcgaagagcattctgaatgaaaaccttgataactgcacagactca
aatgccattgaggaggcttggttttcagatggtagattttcgttactcactgaagatggt
acaggtgtcaaaaaaggagcaaggaacaaatcaaattcttctgacctcaacggtgatgaa
aagagctgtgatttcagcactgccgatggagcactccagaaagcaaagtctattctgaac
gaatgtgatgtaattgaaaatccacaacctgagactggccacaaagtgcatctggaaaag
attccaaaaaaggaaacgcatgaaatctctcatggtagcacagccagtgggaaagaggtg
tttatttcagagaaggcacttcaagaagcatgtgatgatacccttgccagtgatactgac
cctcacaaaagatctgaagcaaataggccactgaaggtccctactccccatattaatgtt
cagcgtgtgccggtcaaagcagtccgactggaggaccgcgaagtgatccagaccattgtt
ggaatggcatgtcagtcttcatctgtggaatgtcaagcggagtcttccttgttacatttt
gaatcccttggattcagtggctgctctgtgactcagaggaggtactttgcccaggaggcc
atggattgtaccaaggctcttttagaggacgaagacttgaccgatcattgtcctggaaca
ccaatccaagctaaccccatgtcctgcaaggggggttttgagatgagaagtggaattgtg
aaaaggtcggcagaggatttagggatgacagaccagcctcctctgaaaagaagactcttg
accaaattcgacagaactgtggattgtagtagacggtctcaactcactccagctaaaagc
agttcagatggtatatttaaagacaggagagtcttcaaatataatgtggctcttcaacct
aatgtcaccaggccatatcgcgctaaccagagatgtgtagacacaaggctgaataagacc
gagccacagaagacaacgtcagatccaaccgccgaagaccgtaaaccagttagctccaag
acagctgtatttgtccccccattccggaagaatgtcaagcttgagccacagaggagcagt
ggtcttcaggacaagactagagcacctggtgtgtttgtttccccgtttcggaaagacaac
cgcgtaaccagggagggtccctttaaaccttcagaagataatcattctcccttcatctct
gaaatgccttccaagaccacatctgttccacttcctgagtacaaccccatcactgacact
ggtagtgataacgcaaaggagtccattaaggaacaggacccacaaaatattgacaaaacg
gatctaggcgatgatggtggccattgccttcctgtcaccctaggaggagaggatgccact
gcagaggagtctattgcagatgcagagtgcttgcagctggcccgagacatgcaggacatg
agaatcaagaagaagaagcgacagaccattagacctctccctggcagcctgtacctggcc
aagacatctggggtggccaggctgaccctcagggaggctgttggaggtcggcacccggta
caacacacacacaaacagctgtatggctacggagtgcaccggcatgtttcggatatcagc
agtgagagtgccgaggcgttccgctttgtctgccgacacttcttcagacgcgaggcgttt
gtagaggggtgcgttcagctggccgacgggggttggctcatccctcgcaacgatggaacc
gcagggaaacatgagttccacagagcgttgtgtgacagccctggcgtggaccccaagctg
atcagtgaagcctgggtgttcaacaactaccgctgggtggtgtggaaacgagcctgcatg
gagagggcattcccagcggtgatgggcagcctctgtctcacaccagaacaggtgctccta
caactgaaatacaggtacgacttggaggtggacaacagcaagaggtccgctctaaggaag
atcatggagagagacgacacggcagtcaagaccatggtgctttgtgtatgtggtgttgtc
accaaaggccataacccaacaaggcagagctggagtgagaccaagaccaaaacaccaccc
gggagtgccgtagggtctaaagccacgtcgtcccctgtaggcttgatctggctgacggat
ggctggtacgccatcaaggcccagctggacgtcccactgaccgccatgctccaccggggc
cgcctggcgattggggggaaggtgatggtccacggggccgagctggtgggatctcaggat
gcctgctccccactagaggctcccgactccctcatgctgaagattggggccaacggcacc
agagcggcgcgttggtacaccaggctaggattctacagcaaccctagtccgttcctcctc
cccctctcctccctctacagcaacggaggccccgtgggctgtgtggacattgtggtgctg
aggagctaccctacccagtggatggagaagaagtcggacggagggtttgtgttccgcgca
ggccgtgcagaggagagggaggcgcggcgtcacggagacgccaaacacaaagccatggag
atcctgttcgccaagatccaggcccagtttgagaaggaggacgtttgcggtaaacccaga
ggccggagacggaccctgcgtggtcgagacattgagacactgctggacggggaggagctg
tacgacgcggtggagaatgacccagtttatctggagggccgtctgagtaagcagcaacgg
gaggcgttgaacagctataggcgttgtgtcggtgagaggaggcaagcggcactgcaggag
cggttccgccaggctctggaaagcacccaggagggcgagggcgggagctgtcacaaccga
gacgtgacccccatctggaagctcagcgtcgctgactccagggccaagccgggcagcaat
gcagtgtacctgttgaatatctggcgcccctccatggatctgcagtccttgctgaaggag
ggctgtcgatacaaggcctacaaactatccacgtcggagggcaagaaacgagccggtaac
acctccattcagctcaccgccaccaagaaaacccagttccagaatttacaggcttctgca
gggtggttgtctgagcgtttccaagcccgagaggcggttggctttcgcgttctcctgaac
cgggacttaaagccgctctgtggagaggtggatctggtaggctacgtcatctccatcaca
gacagacaaggtcactctccagtggtgtatctagtggatggctggctggactttgtcaag
gtgcgctgctgcagcagtctggtccagcagggcttggaggaggtggtcaagcctctggct
ctggtggctctcagtaaccttcagctcagagcccatccctcctcccccacccctatccgc
agcaccatccctggcctatacgctggagaactggtctcgttttccaccaaccccaaggag
ccacatctacaggaggctgccactcaactcagaacccttgtccagggccaggaacacttc
ttcaggactgcagaggagaggttatctaacttagtccaggggtctgtccagtgtcttcct
ccgccgccatggactccagatgccaaaccagatgccaggactactatgacaccccaggag
tcagttcgaagcgttggccccttcacccccctgaacagggtcgtcccccctccacccgcc
tgctcctccgggggggacaacaagagcctgaaaagaaagaggggcctggagtacctgtgt
cgtgtcccctctccccctccactctgccccttgggcaccatgaccttactctcgccgtcc
gtcaacaagaccttcaacacccctcgcaggaccgagacccaccggatcctaaagacacct
ctggcccccgctccacagcatgtccacctgccccaagaggatgagtgggtggaggatgaa
gagctggtcatgattgacactcaggccctacacgatggcatagggatagacacgtga
DBGET
integrated database retrieval system
