Salvelinus fontinalis (brook trout): 129832486
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Entry
129832486 CDS
T11136
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04382
Cornified envelope formation
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
sfon04518
Integrin signaling
sfon04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129832486 (col4a3)
04518 Integrin signaling
129832486 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129832486 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129832486 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129832486 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129832486 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129832486 (col4a3)
Exosome [BR:
sfon04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129832486 (col4a3)
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129832486 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129832486
NCBI-ProteinID:
XP_055752571
LinkDB
All DBs
Position
33:complement(50150173..50270577)
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AA seq
1669 aa
AA seq
DB search
MTDFLTFPALLLSVLLLLLSGIITPAYTDDACSCTGKSRCHCDGVKGSKGEPGYPGYDGL
PGVVGYPGFEGNPGPFGPKGNLGFPGLSGPKGSRGLPGKPGFSGPPGQPGIPGNEGPMGP
SGIPGCNGTKGDSGYPGLPGVPGPVGLPGVHGLPGFKGDSYYFPPAAEVDGHIGPQGRDG
GKGQRGLPGLPGLPGLEGPSGTPGLPGLTGVPGEKGQEGPSPVIPGPRGQEGDQGPPGRP
GQKGIKLYAEGPKELKGEPGDTGEKGCKGQHGFPGRRGYKGDKGDQGESGALGKPGKDGN
PGTYGIQGDKGDVGYQGPPGTEGSMGDKGDRGPTGPPGDLIQINGRVKGLQGFPGPLGPP
GYTGNQGVIGFPGMKGEPGLFFPGAPGNPGPPGLAGDKGERGEPAPYIIGPPGPTGPPGK
DGPIGDRGPPGIPDLLRGNPGPPGPKGIKGIPGQPGNSGGFGETGEKGDVCRLCMSTDVR
PGPPGPAGEPGRPGEKGRDGDPGSKGFRGVKGLGGPPGPQGPYGLPGVPGSPGPKGDKSP
MSPGDRGPVGTPGAPGVPGSDGTDGVPGYPGLKGQPGLKGNPGPPGPKGDRGDAGSQGIR
GRTGQMGTQGPPGVGPPGGPGQKGNLGVQGLRGRPGDPGEKGSAGETITTTGDPGLKGEK
GHQGNPGPSGNPGINGYPGFPGNFGAKGDRGLSVRGPPGNTGPKGEKGQPGPAGAPGIGS
MGRPGPSGAPGMPGPKGDFRPGLPGLPGRLGPPGEDGSLGLTGNSGLPGLDRLPGLPGRD
GPQGDRGSKGAEGLPGLPGDPGACTQGIPGPPGAVGLNGIIGFTGTRGQKGAQGDSGLPG
RGAPGLMGPFGRPGFDGPPGPGGAAGLKGFRGRDGVPGTPGLRGDMGPSGACGTPGPDGG
PGPGGRLGPKGRMGADGVKGRVGVRGPVGDSGAPGDIGVTTYIEVHGDPGDPGPIGLRGI
TGAKGDLGVIGHNGASGKDGIPGIPGPQGAVGDPGRDGQKGSPGFNGNPGVAGDMGVPGV
KGEKGGTGGRGEPGSSGRPGPNGVNGVKGEPSLPGPGAKGRQGEKGVPGFPGFPGEKGEM
GVAGRFGTLGAIGPTGPKGREGLQGSRGPPGPAGEKGINGLPGNNGCHGQNGLQGSPGLA
GDPGSAGPRGAQGRDGIPGPAGEKGDMGAPGIGPKGTDGKMGQSGLKGDAGIPGRFGPPG
PSGPLGDVGPPGPPGPMGLSGSPGRDGMCFEGLKGDRGQNGVPGPQGMQGPRGPPGPPGP
GFKGDKGNKGAMGLLGTPGYRGDTGLQGRPGNDGTPGGLGVKGEMGQLGDIGPNGQKGDA
GPAGPVGCPGQKGLPGAPGPKGNDDYIVVTLIPGEQGLPGDLGGRGEPGPTGAQGRNGPP
GLPGPKGVLGLDGPVGLPGFQAAKGDRGFPGPQGIQGEQGTPGAKGPRGSPGPYFSGPIE
DGFLFTRHSQRQNVPQCPGGSNFIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTMPFL
FCNTDSTCRYASRNDYSYWLSTDEAMPSDMALISGDSLESYVSRCAVCETKANIIAVHSQ
TNQIPVCPRGWLSLWAGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRGTCN
YYTDSYSYWLASLDPENMFSKPRPQTVKGDCPGSIVSRCQVCMKQWQRL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgacagactttctcacttttcccgcactgctcctgagcgttctgttgctactgctcagc
ggcatcatcacacctgcatacacagatgatgcgtgcagctgcaccggaaagtccaggtgt
cactgtgatggagtaaaaggcagtaagggtgagcctgggtatccaggttatgatgggttg
cctggagtggttggttatccaggttttgaaggtaatcctggaccttttggccctaaggga
aatcttggctttcctggattgtcaggacccaaaggctcacggggtctccctgggaaacct
gggttctctggtccacctgggcagccaggaatcccaggaaatgaaggaccaatggggcca
tcgggaatcccggggtgcaatgggacgaagggggacagtggatacccagggttacctggg
gtgccgggacctgttggattaccaggtgtccatggattgccaggatttaagggagactcc
tactacttcccacccgctgctgaggttgatggacatattggaccacaagggagagatggt
ggcaagggtcagcgagggttacctggactgccgggtcttcctgggctggagggaccgagc
gggactccaggattacctgggttaacgggtgtaccaggagagaagggtcaggaaggtcca
agccctgtcattccaggcccaagaggtcaagagggtgaccaaggccctcccgggagacct
gggcagaagggcataaagctgtatgcagagggtcccaaggaactgaagggggagccaggt
gatacaggagagaaggggtgtaaaggccagcatggtttccctgggcgtcgtggatataaa
ggggacaaaggcgaccaaggagaatctggggctctggggaaacctgggaaagatgggaac
cctgggacctatggaattcagggtgataaaggtgatgtgggctaccagggacctcctgga
acagaaggttcaatgggtgacaaaggtgaccgcggacccacaggtcctccaggggatttg
attcagatcaatgggagagtcaaaggcttgcagggttttcctgggcccctcggaccccct
ggctatactggtaatcaaggtgtgattggttttcctggaatgaagggggaaccagggttg
tttttccctggggcccctgggaatcctgggccccctggtttagctggggataaaggggag
aggggggaacccgccccctacataattggcccccctggacccactgggccccctggaaaa
gatggccccataggcgaccgtggtccccctggaattccagatctgttgagaggcaaccct
ggaccacccggtcctaaaggcatcaaaggcatcccaggacaaccaggaaatagtggcggg
ttcggagaaacaggtgagaagggtgatgtctgtcgactctgcatgtccactgatgtgagg
cctggaccaccaggacctgccggagagcctggtaggcctggagagaaaggtcgagatggt
gatcctggatccaagggatttagaggagtcaaaggtcttggaggtccaccaggtccacag
ggtccctatggtttaccaggtgtgccaggttctccaggacccaagggggacaaaagtccc
atgtccccaggagacagggggcctgttggcacacctggggctccaggagttcctgggagc
gatgggactgacggggtccccggatacccaggactgaaaggccagcctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggggcgatgccggctctcagggtatacgt
ggacggacaggccagatggggactcagggcccccccggtgtggggcccccagggggccct
ggacagaagggcaacctgggggtgcaaggcctgcgagggagacctggagatccaggagag
aaaggctcagcgggtgagacgataacaaccacaggagacccaggactgaagggagagaag
ggtcatcaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaacttcggcgccaagggggatagaggtctgtctgtccggggccctcctggcaac
actgggcctaaaggtgagaagggccagccagggcctgctggtgccccagggattggtagt
atgggacgaccaggaccatccggggctcccgggatgccaggccctaagggtgatttcaga
ccagggctcccagggctgccaggtagactaggccccccaggggaggatggttctctgggg
ctgactggaaactctggtctgcctgggcttgatagattgcctggcctaccaggaagagat
ggtccacagggagacagaggcagtaaaggtgctgagggcttgcctggtctgcctggggat
cctggagcgtgtacacaaggcattccaggccctccgggggctgtaggtctcaatggaatc
attggcttcacagggaccagaggacagaagggggcgcagggcgattcaggtctgcctggc
agaggggccccaggattgatggggccgtttggacggcccgggtttgatgggcccccggga
cctgggggggctgccggcctgaaaggattcagaggaagagatggtgttcctgggacacca
ggcctgagaggagacatggggccatcaggagcgtgtggtacaccaggaccagacggaggc
ccaggaccagggggacgacttggccctaaaggtcggatgggtgctgatggtgtgaagggc
cgtgtaggagtcaggggacctgtgggagattctggggctcctggagatattggagtcaca
acatacatcgaggtccatggggaccctggggacccaggacctataggtctgaggggcata
acaggtgccaaaggagatctaggtgtgatagggcacaatggagccagtggcaaggatggg
attcccgggattcccgggccgcaaggtgctgttggcgacccaggcagagatggccagaaa
ggaagtcctggtttcaatggaaaccctggagtcgcaggagatatgggtgtgccaggtgta
aagggtgagaaagggggaacaggaggtcgtggagagcctggttcatctggaagaccaggt
ccaaatggagtaaatggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacaaggagaaaagggagtgccagggtttccaggttttccaggagagaagggggagatg
ggtgtagcggggaggttcggaaccctgggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggaccagccggggagaagggcattaatggt
ctcccaggcaataatggctgtcatggccagaatggcctgcaagggagcccaggattggct
ggtgacccagggtctgcaggccccagaggtgcccagggtcgagacggcatccctggccca
gcaggagagaaaggagacatgggagcccctggcattggaccaaaaggcacagacggaaag
atgggccaatctggacttaagggggatgcagggatacctggccgctttggccctcctggt
ccctcagggcctttgggggacgttggacctccaggcccccctggtcctatgggactgtct
ggaagtcctggccgggatggaatgtgcttcgaagggctaaaaggagaccgtggacaaaat
ggtgtccctggaccccaaggtatgcaggggccacggggacctcctggtccaccgggacct
ggctttaaaggagataaagggaacaaaggcgccatgggcctcctgggtacgcctgggtat
agaggagacacagggttacagggcagaccgggtaatgatggcacaccaggtggtttggga
gtcaaaggggagatgggacagttaggagacatcggaccaaacggtcagaaaggagatgca
ggacctgcaggacctgtaggttgccctggacagaaagggctgcctggagcaccagggcct
aaggggaatgatgattacatcgtggtgacactgatccctggagaacaggggctgccaggt
gacctggggggcagaggagagcctggacccacaggagctcagggacgcaacggaccacca
ggactcccaggtccaaaaggtgtcttgggcctagatgggccagtaggcctgcctggattc
caggccgccaagggagacagagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccttacttttccgggccaatagag
gacggtttcctattcacccgtcacagccagaggcagaacgtgccccagtgcccagggggc
agcaacttcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactgggaagctgtctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagcacgtgccgctacgcctcccgtaacgactactcctactggctg
tccacggatgaggccatgccaagcgacatggctctcatctctggtgactcactggagagc
tatgtcagcaggtgtgcagtgtgtgagaccaaagcaaacatcatcgctgttcacagtcag
accaaccagatccctgtttgtccacggggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggagcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacatgcaac
tactacacggactcctacagttactggctggcctccctggaccccgaaaacatgttcagt
aaacccaggcctcagacagtgaagggagactgcccgggtagtatagtcagtcgttgtcag
gtctgtatgaagcagtggcagcggctctaa
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