Salvelinus fontinalis (brook trout): 129832832
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Entry
129832832 CDS
T11136
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129832832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129832832
03041 Spliceosome [BR:
sfon03041
]
129832832
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129832832
Spliceosome [BR:
sfon03041
]
Complex B
Other components
Prp19-related factors
129832832
Complex C
129832832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129832832
NCBI-ProteinID:
XP_055752855
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Position
34:complement(1733760..1759275)
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AA seq
848 aa
AA seq
DB search
MPSLNGKPDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGTMSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCIMEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATISDLAPGQLGLDDMKLLEQQAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDDDGDDEDQGPEEVQLEQKSVPTAVF
GGLKEGDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctctaaatgggaaaccggacgtcatatttgaggaagatgacttgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagttcaaa
caaaatggcacaatgtccatcctcaacatgatatatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcatggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatatggctggactactgccagttcctggtgtctcagtgtaag
atcaccaggagcagacgtacatttgaccgagcgctccgagcccttcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgccactgcctgagaccgcc
atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcggcaagctggatgaagcagcggtgcgtctggcagccgttgtcaac
gatgagagctttgtgtccaaggagggaaagtctaactaccagctatggcatgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgcttcacagaccagctaggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctatgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagttggggaaagatgaagaagaggacata
gacctggagctgcgtctggctcgctttgagcagctgattgcccgcaggcccctactgctg
aacagtgtgctgctgagacagaatccccacaatgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggcaacagggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgatgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgacgtgtcagagcccgtgcagaacagagtgtataagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaagcg
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtatgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcacgccatggcagtgtatgagagagccacgcaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagcgatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgcctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggcaga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acgtggaaggagtttgagatccgccacgggaacgaagacactatccgggagatgctgagg
atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccatctcagaccttgccccgggccagctggggctggat
gatatgaagctgttggagcagcaggcccaacagctggccgccgaggctgaacaggacaaa
cccaaactcaaagagaagatcctcttcgtcaggagtgacacatctcgcagtgagctggct
gaactggctaaacaagccaaccctgatgagattgatattgatgatgatgatggtgatgat
gaagaccagggcccagaggaggtgcagctggaacagaagagtgtccccactgctgtcttt
ggagggctgaaagaaggagacgattga
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