Salvelinus fontinalis (brook trout): 129833447
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Entry
129833447 CDS
T11136
Name
(RefSeq) leucine-rich repeat-containing protein 4B-like
KO
K16360
netrin-G3 ligand
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04514
Cell adhesion molecule (CAM) interaction
sfon04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129833447
04517 IgSF CAM signaling
129833447
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129833447
Cell adhesion molecules [BR:
sfon04515
]
Immunoglobulin superfamily
NGL family
129833447
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_9
LRR_14
ig
LRR_1
V-set
Ig_2
LRR_NXF1-5
VEGFR1-3_N_Ig-like
LRR_EndoS
LRRNT
Motif
Other DBs
NCBI-GeneID:
129833447
NCBI-ProteinID:
XP_055754037
LinkDB
All DBs
Position
34:20182591..20222043
Genome browser
AA seq
733 aa
AA seq
DB search
MRNTTVTCLPCPSPLLLLLVQLLLRLLLSGPEFVGAASPCPTHCSCSNQASRVICTRQSL
DGVPESISVNTRYLNLQENSIEVIKSDTFKHLRHLEILQLSKNKISQIEVGAFNGLPNLN
TLELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDY
ISDAAFVGLVNLRYLNLGMCGLKDIPNLTALVRLEELELSGNRLEIIRPGSFQGLVSLRK
LWLMHSQVKVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNC
DVLWLSWWLKETVPSNTTCCARCHAPPGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTGTTMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNSAGNTTATAVLNVTAADVGVSYFTTVTVETVEPNEGPTVYAGVMNSHNESYVITPSG
HLWRGGLPTTASSLSAWSLSSSRATRPTFTVPITAETGYSGLDDVMKTTKIIIGCFVAIT
FMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDEIGAGAGGRGSGISGGGTVSRDGG
GGGGVGGGQSLRMHHPEMVNLPNLARQEHLNHYYKAHHFNNNMMGLGMGLNNNNNPSLSP
CSQTQSTPNSCAQGHTSTSGGTPTGGSLPSPLPLPQLGIHSSLKGLMGKGQNPQIEPLLF
KSGSKENVQETQI
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaacaccacggtgacctgccttccctgcccctcccccctcctcctcctattggtc
cagctgctactgcggctcctcctctctgggccagaatttgtaggggccgcctccccctgc
cccacccattgcagctgctccaatcaggccagtcgagtcatctgtacgagacagagtctg
gatggggtacctgagagcatatcagtcaacacacgatacctcaacctgcaagagaattca
atagaggttatcaagtcagacaccttcaagcacttgaggcaccttgagatcctgcagctg
tctaagaacaaaatcagtcagattgaggtgggagcattcaatggcctgcccaacctcaat
acgctggagctgttcgacaaccgcctcaccctggtcccctcacaggccttcgagtacctc
agcaagctgcgggagctgtggttacggaacaaccccatcgagacgctgccgggctacgcc
ttccaccgcgtgccctcgctgcgccggctggacctgggagagctcaagaagctggactac
atctcagacgccgccttcgtgggcctggtcaacctgcgctacctgaacctgggcatgtgt
ggtctgaaggacatccccaacctgacggccctggtgcgtctggaggagctggagctgtct
gggaaccgtctggagatcatccggcctggctccttccagggcctggtgtcgctccgtaag
ctgtggctcatgcactcacaagtgaaggtcatcgagcgcaatgccttcgacgacctgaag
aacctggaggagctcaacctttcccacaactccctgcactcgctgccccatgacctcttc
accccgctgcaccagctggagcgggtgcacctcaaccacaacccctgggtgtgcaactgt
gacgtgctgtggctcagctggtggctgaaggagacggtgcccagtaacactacgtgctgc
gcccgctgccacgctccccccggcctgaagggcaggtacatcggggagctggatcagagc
cacttcacctgctacgctcccgtcatcgtggagccgcccaccgacctcaacgttaccgag
ggcatggctgcagagctgaagtgtcgcacgggcaccaccatgacctcggtcaactggctc
acgcccaacggcaccctgatgacccacggctcctaccgggtccggatctccgtgctgcac
gacggtacgctcaactttaccaacgtcacactgagggacacgggtcagtacacctgcatg
gtgaccaactcggctggcaacaccacggcaaccgccgtgcttaatgtcactgccgccgac
gttggcgtcagctacttcactactgtcaccgtggagacggtggagcccaacgagggcccg
acagtctacgcgggcgtcatgaacagccacaacgagtcatacgtcattaccccgtctggc
cacctgtggaggggggggctccctaccaccgcctcctccctgtcagcctggtccttgtcc
tcgtcccgggccacccggcccacctttactgtgcccatcactgccgagacgggctattct
ggccttgatgacgtgatgaagaccaccaagatcatcattggctgcttcgtggccattacc
ttcatggcagccgtgatgctggtggtcttctacaagctgaggaagcagcaccagctgcac
aagcaccacggccccgcccgcgccatcgagatcatcaacgtggaggacgagattggcgcc
ggtgccggtggacgcgggagcggtatctcagggggcggcaccgtctctcgggatggaggc
ggagggggcggagtaggaggagggcagagcctgaggatgcatcacccggagatggtcaac
ctgcccaacctggccagacaggagcacctcaaccactactacaaggcccaccacttcaac
aacaacatgatgggcctgggcatgggcctcaacaacaacaacaacccctccctctccccc
tgttcccagacccagagcacccccaactcctgcgcacaggggcacacctccaccagcggt
ggcacccccacgggtggctcgctgccctcccctttgcccctgccccagctgggcatccac
agctctctgaaggggctcatggggaaaggccagaaccctcagatcgagcctctgctcttc
aagagtggctccaaggagaatgtgcaagagactcagatctga
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