Salvelinus fontinalis (brook trout): 129833479
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Entry
129833479 CDS
T11136
Symbol
smg1
Name
(RefSeq) serine/threonine-protein kinase SMG1 isoform X1
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129833479 (smg1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sfon01001
]
129833479 (smg1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129833479 (smg1)
Enzymes [BR:
sfon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
129833479 (smg1)
Protein kinases [BR:
sfon01001
]
Serine/threonine kinases: Other
PIKK family [OT]
129833479 (smg1)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129833479 (smg1)
mRNA cycle factors
Common to processing body (P body) and stress granule
129833479 (smg1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMG1
PI3_PI4_kinase
SMG1_N
FAT
HEAT_ATR
HEAT
FIMAH
DEC-1_N
Motif
Other DBs
NCBI-GeneID:
129833479
NCBI-ProteinID:
XP_055754092
LinkDB
All DBs
Position
2:complement(100968254..101097104)
Genome browser
AA seq
3106 aa
AA seq
DB search
MSRKALGFRLSSAHKLQRNWNDWQPRGDSVSAASQDGVKCIATRDLGPAAAAVYDPTAVG
VATSDRPVSPTLLHDAFPDTADTLDEGGGYEAAGGFSDDTFGWKSLGQELRINDATADLN
TFQQHGNRALASKDMRKSHDRGMSHSDESRLSNLLRRVSREEDRDRRLATVRQLREFITH
SDNKVALVKQLDTILSTLNDILNESSKMLSELRQEAAVCLGLLCTALSYEAERIFKWMFV
KFSSSTRDEVRLLYLVAAYRALEAAGERKAFSPVMQLVMSSLQSILENLDTPELLCQSVR
CILQVARCYPHVFSTNFRDTVDILVGWHIDHTQKQSLTQQVSGWLQSLEQFWVADLTFST
TLLGQFLEDMEAYAEDLGHVGSGEAVDEDIPPPTVSLPKLAALLRVFSTVVRCIGQRFNP
VRGPPITQAYVSDVLNRVLACVSTAKQVLFSEPVLTAGNECVCVLLVSLEPSAQLTDTVI
TYGLDQLDACRACGPEYSLAVLSLVTLIVDQINTKLPAWFVEKLLAPTSQLLELRFNRDR
EVMSAALGVYQSVLSLKNIPILEAAYKLVLGEMACALSSLLAPLNPSPTPGTPSPTPPPF
PGIQHPVFAPLTLTPERAEFTLIFNLSALTTIGNTKNSLIGMWALSPTVFALLSQNLMLV
HSDLAVYHPAVQYAVLYTLYSHCTRHDHFISSSLSSSSPSLFDGAVISTVTTATRKHFST
LLSLLGALLRKEQLYTEARKLLLTWSLEMCLMMKRSDTYTPLFSLPSFHKFCKGLLHNAL
NEDPVICLQTCNSLQVISSSLNTELLQRCVDICRVQLVHSAVRVRQAYGKLLRTIPLDVT
LSNHSHPEIEEISLVVRRHMSRPPSSTFHPQDFSDLISFILYGSQHRGGREPWLERLYHS
CQRLEKREGVSSGREGGVCVSGGGVCVPRGLLKTEAVLWQWAVWEAAQFTVLSKLRTPLG
RAQDTFQTIEGMIRSLAAHSLNTEQELSQWSAGDTDDGHHSNQLRLALLLQFLENLEKLM
YNAYEGCANALTAPPKGIRTFFYTNRQTCQDWLTRIRLALMRVGLLSGQPAVTVRHGLDL
LTEIQNSSTLGPELEAPLVMLVEALCELHCPEAIHGLAAWSLTHTGKSLAWVSSVALQAE
GRFEKAAVEYQEQLCAVTGMDCSIKGFDRSLLKLAGANSYNTASPKHNGNGDGRKTVLLK
SNECSSEVLNLLANKACQCYVALGDWSSVQEWQASVHALKKNPSNPAAASVHLKTDFNYV
RALSCFEDGDFQECRAQLELLAGEREDYGLLNTSTGSKDKLDLKRLLPAVLSPDPSELQK
AIEVQLLRSAVAAMTTANHEQEQKAMPTSDTLVRYLKQTGRISLGPLRLSTLTLSDGLPT
LATLQLYCCSALENTLSGQEDCLIPLYSEALSTCKQQDVQPWLHALRYTIYQRQLLLRLK
GSSAPLDGHLMELCLTAVKFARKQGNIALATRLLGQCSEEEKEGGVEEGLSSAFRRLSLA
GAVGEKWGPELQIEKAKVLCTAGQSMAAMEMLSSCALSFCRSGKCERAACRSVLTLCKWL
LADWKDMTPQLKQVVKRSGVMNPGVAALPPISRNITALLELPLEDQGMPRITAETTVSVG
VGEPDLVLGQLYQLSTSQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVPLLPGEKKEI
EELLPECTSEEDKENIFSILGQAMCRPAGIQDEDMALQQEDEEEDDMVDVIWRQLLSACP
WLEQQGEVEGVQGGGSGVMEGLIRVWRRVVDRIFSLYKVSCGAYFTFLKLNAGQVPIDED
DPKLLLTNQNSKQSNDDVIVMATLRLLRLLVKHAGELREGLELGLASTPTAPWRGIIPQL
FSRLNHPEAYIRQSICSLLCRVAQDSPHLILYPAIVGSLSLGGEAQHAGNKLPSALPTFL
GSMQGEGLCEEGEGTLGSNPASQEEDGRGEEFPALCSSQDQAMMHDCYSKIVDKLSAANP
TMVLQVQMLVGELRRVTLLWDELWLGVLQQQHMHVLRRIQQLEDEVKRVQNNNTLRKEEK
VAIMCEKHSALMRPVVFALDHVRSITTTPAETPHETWFQQTYGDAITSALERLKSPHNPA
NPASSWVPFKQIMLSLQQRAQKRTSYLLRLDHISPRLAAMATTEMALPGEVSATDALTIQ
SVGNTITILPTKTKPKKLHFLGSDGRNYPYLFKGLEDLHLDERIMQFLSIVNTMFTKVNQ
QERPHFHARHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKAQDSFQQQPQ
PLPLVPRPSELYYSKIGPALKGVGLSLDVSRRDWPLSVMRDVLKELMASTPPNLLAKELW
CSCTTSSEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEK
GKSLRVPEKVPFRMTHNIETALGVTGVEGIFRLSCEQVIQMMRRGRETLLTLLEAFVYDP
LVDWTAGGEVGFAGAVYGGGGQQAENKQSKREMERDITRSLFSSRVAEIKVNWFKNREEM
LGVLPQVEGAVEEYLTLQKLLSQGDKMTTKILEEMSFLEGAESCSDHLILTLEHRYSEHT
QLASRQRTVQELIQGKQGDLDQWMSQYQAAFSSLEATQLASLLQDISSHIDLGPPSYVPA
TAFLQNAGQAHLISQCEGLEAELGSLLQQRRGALRGCLEQLHSYATVALLYPRAVLLRHR
AHLWKQWLEELLCDMTVDHCQQISRQYEVQFAPQPPLASCQFLSSVELALQHQASEINTR
VLRQAERVKAEGATVHACEEQLQEIERCINVFLLENPEQGSLSLATIISSALCTLTRRNL
VMEGAAAAAGGQLVELTSRDGAWFLEELCSMSGNITSLVQLLGQCQLLPHDLDLPSPQET
AQTVYLANAVYTCLQELNTNFRQIIFPEALRCMLKGEATLETMLSELDLLVEQCADGVSL
QGLADALHTHLRSAAMGLEHEADTHCLHITRMLRAQYCQLMQPPGGSMDAVGQDSPKMSA
GQMLLVAFDGMFAQLETAFGQLTEKMISMEVPPAWRKVDVMREARAAQVHFFHSGPHRHV
LEEIFFLKRLQTIREFFRLCGSFAQTLSGENTDGFIVSLCQNSCSI
NT seq
9321 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtaaagcccttgggtttcggcttagcagcgcccacaaactgcagcgaaactgg
aatgattggcagcccagaggcgacagcgtgtcagcagctagccaggacggtgtgaagtgc
atcgccaccagagacctgggtccagctgcagcagctgtatacgacccaacagcagtggga
gtagcaacctcggaccggcctgtctccccaactctcctacatgatgccttcccagacacc
gcagacacactggacgaagggggaggatatgaagctgcaggagggttcagtgatgatact
tttggttggaagtcgttggggcaagagttgaggatcaacgatgcgaccgccgatttgaac
acttttcagcagcatggaaaccgtgctttagcttctaaggacatgaggaaatcccacgac
agagggatgtctcactctgatgagtctcgcctgtctaacctcctgcgccgtgtgtcccgt
gaggaggacagggaccgccggctggccaccgtcagacagctccgggagttcatcactcac
tctgacaacaaagtggccctggtgaaacagttggatacgatcctcagtaccctgaatgat
attttgaatgaaagcagtaagatgctgtcagagctgcgtcaggaagcagcggtgtgcctg
ggtctgctgtgcaccgctctgagctatgaagcagagcgcatcttcaagtggatgtttgtc
aagttcagctccagcacccgggacgaggtcaggctgctctacctggtggcagcgtaccga
gccctggaggcagccggagagaggaaggccttctcacctgtcatgcagctggtgatgagt
agcctgcagtccatcctggagaacctggacacgccggagctgctgtgtcagagcgtccgc
tgcatcctgcaggtggcccgctgctacccacatgtcttcagcaccaacttcagagatacg
gtggatatcttggtgggctggcacattgaccacacacagaaacagtctctgactcagcag
gtctcaggctggctgcagagtctggagcagttctgggtagcagacctgaccttctccacc
acgctgttgggacagtttctagaggacatggaggcctacgcagaggacctgggtcacgtg
ggttctggcgaggcggtcgacgaggacatccctccacccacggtgtctctgcccaaactg
gccgccctgctgagggtgttcagcaccgtggtacgctgcatcggacagcgcttcaacccc
gttagaggaccgcccatcacacaggcatacgtctctgatgttttgaaccgggtgttggcg
tgcgtgtcgacggccaagcaggtgttgttctctgagccggtgttgacggcggggaacgag
tgtgtgtgtgtcctgctggtgagcttggagccgtccgcacagctgaccgacacggtcatc
acctacggcctggaccagctggatgcctgccgggcctgtggcccagagtacagcctggcc
gtcctcagcctcgtcacattgattgtggaccagatcaacactaagcttccagcttggttt
gtggagaagctgctggccccgacatcacagctcctggaactacgcttcaacagggacaga
gaggtgatgtcagcagccctgggtgtgtaccagtctgttttgagcctaaagaacattccc
attctggaagcagcgtataaactggttctgggagagatggcctgtgccctgtccagcctt
ctggcccccctgaacccctccccgacccctggtaccccctccccgacccctccacccttt
cccggcatccagcaccctgtcttcgcccccctcaccctcaccccagagagggcagagttc
accctcatcttcaacctgtcggccctcaccaccatcggcaacaccaagaactcactcata
gggatgtgggctctgtctccgacggtgtttgcgttgttgagtcagaacctgatgttggtc
cactctgacctggccgtctaccaccctgctgtacaatatgcagtgttatataccctgtac
tcacactgtaccagacatgatcacttcatctcgtccagcctgtcctcctcctccccttct
ctctttgacggggcggtcatcagcacggtaaccacggcaaccaggaaacacttcagcact
ctgctgtccctgctgggagccctgctgaggaaggagcagctctacactgaggccaggaag
ctgttgttgacgtggtctctggagatgtgcctgatgatgaagaggtctgatacctacacc
cctctcttctccctgccctccttccacaagttctgcaagggtctgctccacaacgccctg
aatgaggacccagtcatctgcctccagacctgcaacagccttcaggtcatctcctcctca
ctcaacacagagctgctgcagaggtgtgtggatatttgtcgtgtccagctagtgcactct
gcggtgagggtgaggcaggcgtacggcaagctactgaggacaatccctctggacgtgact
ctcagtaaccacagccacccagagatagaggagatctccttggtggtccgtcgccacatg
agccgcccccccagcagcacctttcacccccaggacttcagtgacctcatcagcttcatc
ctctatggcagccagcaccgcggaggtagagaaccatggctggagcgtctgtaccacagc
tgtcagcgtctggagaaacgcgagggtgtctcgtcaggtcgtgaagggggtgtgtgtgtc
tccggtggcggtgtgtgtgtaccgcgcggtctgctgaagacggaggcggtgctgtggcag
tgggcggtgtgggaagcagcgcagttcaccgtgttgtctaaactccgtaccccgctggga
cgggcacaggacaccttccagaccatagagggtatgatccgcagcctggcggcccacagt
ctgaacactgaacaggagctcagccaatggagcgccggcgacacggatgacggtcaccat
agcaaccagctgcgtctggcactgctcttgcagttcctggaaaacctggagaaactgatg
tacaacgcctacgagggctgtgccaacgctctgaccgcaccgcccaagggtattagaaca
ttcttctataccaaccgtcagacttgccaggattggctgactcgtatccgcctggccctg
atgagggtggggcttctgtctggccaaccagcagtcaccgtccgccacggcttggacctg
ctgaccgagatccagaacagcagcactctgggtccagagttggaggctcctctggtgatg
ctggtagaggctctgtgtgaacttcactgtcctgaggctatccatggtttagctgcctgg
agtctcacccacactggcaagagtctggcttgggtcagctctgtggcactacaggctgag
gggcggtttgagaaggctgcggtggagtaccaggaacagctgtgtgccgtgacagggatg
gactgttccattaagggcttcgaccgctcactcctcaaactggccggagccaacagctat
aacacagccagccccaaacacaacggcaacggtgacggcaggaagacggttctcctcaag
tccaacgagtgttcctccgaggtgctcaacctccttgccaataaggcgtgccagtgctat
gtggccctcggcgattggtcctcggtgcaggagtggcaggccagcgtgcacgccctcaag
aagaaccctagtaaccctgccgcggcgagcgtgcacctgaagacagacttcaactacgta
cgggcactgagctgcttcgaggacggagacttccaagaatgccgtgctcagctggagctc
ctggcgggagagagagaagactacggcctgctcaacacctctactggctccaaggataaa
ctagacctgaagcgtctcctcccggcagtgttgagtccggacccctcagaactgcagaag
gccatcgaggtgcagctgctgcggagtgccgtggccgccatgacaacagccaatcacgag
caggaacagaaggccatgcccacctcggataccctggtccgttacctgaagcagacgggt
cgtatctctctgggtcccctccgcctctccaccctcaccctctctgacggcctgcccact
ctggccaccctgcagctgtactgctgttctgccctggagaacacactcagcggacaggag
gactgtctgatccccctgtacagtgaagctctcagcacctgtaaacaacaggacgtccag
ccgtggctccacgcactgagatacaccatctaccagagacagctactgctcaggctgaaa
ggctcctctgctccgcttgatggccacctgatggaactatgtctgacggccgtcaagttc
gcccggaaacaggggaacatcgccctggcaacgcgcctgctgggccagtgcagcgaggag
gagaaggaggggggggtggaggaggggttgagctctgcgttcaggcgtctgtcactagcg
ggtgctgtgggggagaagtggggacctgaactacagatcgagaaggctaaagtcctctgc
accgcgggtcagtccatggcagccatggagatgttgagttcctgtgctctgtctttctgt
cgctcagggaagtgtgagcgtgctgcctgtcgctccgtcctcactctgtgtaagtggctg
ctggcggactggaaggacatgacccctcagctcaaacaggtggtgaagaggtcaggggtc
atgaacccaggggtcgccgccttgccccccatcagccggaacatcacagccctgctggag
ctacccctagaggaccagggcatgccccgaatcacagctgaaaccacagtgagtgtgggt
gtaggagaaccagacttggtcctggggcaactctaccagttgtccaccagtcaggctccg
gaggtggccaagtcctgggcggctctcgccagctgggcctatcgttggggacggaaggtg
gtcgacaacgccagtcaaggtgaaggtgtgcccctgctcccgggagagaagaaggagatc
gaggagcttctcccagaatgcaccagtgaggaggacaaggagaacatcttcagcatcctg
ggtcaggccatgtgtcgacctgctggaatacaggatgaggacatggccctgcagcaggag
gatgaggaggaggatgacatggtggatgttatctggagacagctgctgtctgcctgtccc
tggctggagcagcagggggaggtggagggggtccagggtgggggtagtggggtgatggag
ggtctgatccgggtctggaggagggtggtggaccggatcttcagtctctacaaggtctcc
tgcggtgcctacttcaccttcctcaaactcaacgctggacaggttcccatcgatgaggat
gaccccaagctgctgctgaccaatcagaacagcaagcagagtaacgacgacgtcatcgtc
atggcgacgctgcggttgctacggctgctggtgaagcacgccggggagctgagggagggg
cttgagcttgggctcgcctcaacccccaccgccccctggagaggcatcatcccccagctg
ttctctcgtctgaaccatccagaggcttacatcagacagagtatctgtagtctgctgtgt
cgcgttgcccaggactcgccacacctcatcctgtaccctgctatagttggatcactgtct
ctgggaggagaggcacagcacgcaggaaacaagctcccgtcggccctgcccaccttcctg
ggcagcatgcagggggaggggctgtgtgaggaaggggaggggacactgggcagtaacccc
gcctcccaggaagaagatgggcggggtgaggagtttcctgcgctgtgttccagccaggac
caggccatgatgcacgactgctacagcaagatagtggacaagctgtctgcagccaacccc
actatggtgttacaggtgcagatgctagtgggagagctgcgccgcgtgactctgctgtgg
gacgagttgtggctgggcgtcctgcagcagcagcacatgcacgtcctacgcaggatacag
cagctggaggacgaggtcaagagggtgcaaaacaacaacacactacgcaaggaggagaag
gtggccatcatgtgtgagaagcactctgctctgatgcgtcccgtggtgttcgctctggac
cacgtgaggagcatcaccaccacgcccgcagagaccccccacgagacctggttccagcag
acctacggggacgccatcacctcggccctggagagactgaagagccctcacaacccggcc
aacccggccagcagctgggtcccgttcaaacagatcatgctgagtctccagcagagggct
cagaagaggaccagctatctgctgcgtctggaccacatcagcccccgcctggctgccatg
gcgaccacagagatggcgttgccgggcgaggtgtcggcaacggacgctttgaccatccaa
agtgttggcaacaccatcaccatcctgccaaccaagaccaagcctaagaaactacacttc
ctgggctccgacggacgcaactacccttacctcttcaaaggtctggaggacctccaccta
gatgagcggatcatgcagttcctttccatagtcaacaccatgttcaccaaggtgaaccag
caggagcgcccccacttccacgcccgccactactccgtcaccccgctggggacacgctca
ggactcatccaatgggtggacggcgccacgccgctgttcggcctctacaagcgctggcag
cagagagaggccgtgctgcaggcacagaaggcccaggattcgttccagcagcagccccag
cccctccctctagttccacggcccagtgagctctactacagcaagataggccccgccctg
aagggggttggcctcagcctggatgtttcgcggcgcgattggccgctcagcgtgatgagg
gatgtgcttaaggagctgatggcatccacgccccctaacctgctggccaaagagctgtgg
tgctcctgtaccacgtctagcgagtggtggagggtcacacagtcctacgccaggtccact
gctgtgatgtctatggtgggctacatcattggcctcggcgaccgtcaccttgacaacgtg
ctgattgacatgacgacgggagaggtggtgcacatcgactacaacgtctgcttcgagaaa
gggaagagcctgcgtgtgccagagaaagtgccgttccgtatgacccacaacattgagacg
gccctgggagtcactggagtggagggcatcttcagactgtcctgtgaacaggtgattcag
atgatgcgtcgtgggcgggagacgctgctgaccctgctggaggcgtttgtgtacgaccct
ctggtggactggacggccgggggggaggtgggcttcgccggggccgtgtacggagggggt
gggcagcaagcggagaacaagcagagcaagagagagatggagagagacatcacacgctcc
ctcttctcctcccgcgtcgctgagatcaaggtgaactggtttaagaaccgtgaggagatg
ttgggggtcctgccccaggtggagggggcagtggaggagtacctcaccctgcagaagctg
ctctctcagggggacaagatgaccaccaagatcctggaggagatgagcttcctggagggg
gctgagagctgctcagaccacctcatactcaccctggaacacaggtactctgagcacacc
cagctagcatctcgtcagcgtacggtccaggagttgatccaggggaagcagggtgacctg
gaccagtggatgtctcagtaccaagcagccttcagcagcctggaggccacacagctagcc
agtctactgcaggacatcagcagtcatatagatctgggccctcccagctacgtcccggcc
acagccttcctgcagaacgccggccaggcccacctaatcagccagtgcgagggcctggag
gctgagttgggctccctgctgcagcagcgccgtggggccctgcgaggctgtctggagcag
ctgcacagctatgccactgtggccctgctgtacccgcgggccgtgctgctgcgccacagg
gcccacctctggaaacagtggctggaagagctgctctgtgacatgactgttgaccactgc
cagcagatttccagacagtatgaggtccagtttgccccccagcctccccttgcgtcgtgc
cagttcttgtccagcgttgagctggccttgcagcaccaggcgtcagagatcaacacgcgt
gttctgcgccaggcggagcgcgtcaaggccgagggcgccacggtccacgcgtgtgaagaa
cagctgcaggagatcgaacgttgcatcaatgtgttcctcctagagaacccagagcagggc
tctctcagcctggccaccatcatctcatcagccctctgcaccctcaccaggcgtaacctg
gtgatggaaggagcggcggcggctgcgggggggcagctggtagagttgacgtctcgtgac
ggggcctggttcctggaggagctgtgttccatgagcggtaatatcacctcattggtccag
ctgctggggcagtgtcagctcctcccacacgacctggacctgccctcgccgcaggagacc
gcccagaccgtctacctggccaacgccgtctacacctgtctacaggaactgaacacgaac
ttccgtcagatcatcttcccggaggctctacgctgcatgttgaagggcgaggccaccctg
gagaccatgctgtctgagctggacctcttagtggagcagtgtgcagacggggtttccctg
caggggctggccgacgccctgcacacacacctccgcagcgccgccatgggcctggagcac
gaggcggacacacactgtctccacatcaccaggatgttgcgggcccagtactgtcagctg
atgcagcctccagggggcagtatggacgcggtgggacaggactctcctaagatgtccgcc
ggtcagatgctgctggtggccttcgatggcatgtttgctcagctagagaccgccttcggg
cagctcacagagaagatgatttccatggaagtgccgccggcgtggcggaaggtggatgtg
atgcgtgaggcgcgggcggcccaggtccatttcttccacagcggtcctcacagacatgtt
ctggaggagatcttcttcctcaagagactccaaaccatcagggagtttttcaggctctgt
ggatccttcgctcagacactctctggtgagaacactgatggctttatagtctctctgtgt
caaaattcatgttcaatttaa
DBGET
integrated database retrieval system
