Salvelinus fontinalis (brook trout): 129834294
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Entry
129834294 CDS
T11136
Name
(RefSeq) collagen alpha-1(X) chain-like
KO
K19479
collagen type X alpha
Organism
sfon Salvelinus fontinalis (brook trout)
SSDB
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
129834294
NCBI-ProteinID:
XP_055755127
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Position
35:complement(7358552..7364487)
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AA seq
656 aa
AA seq
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MEVRVLSILILLVALTAVHGSGSYVVKKVMKVAPQYQPYSVKSHVVSMAGEPGAPGEPGP
EGPPGPPGPPGESAVGQPGPEGPAGPPGPAGYSAPGKPGSSGGPGKPGVPGAAGEKGEVG
TAGLQGPRGMPGPAGRSGPAGISSTGKPGPHGLPGAMGPRGETGLKGHPGMPGLPGAKGD
RGVGIPGAQGETGAVGPMGPAGQPGAAGVGKPGKSGIRGEAGKSGSPGRDGGAGPMGLPG
AKGHTGAPGVGMPGKSGDNGAPGMPGAAGPKGHQGATGATGAPGIPGYGKPGANGQKGER
GVVGSSGTTGQKGEPGAQGYTGATGATGPMGSTGPQGGRGFQGDTGEMGPKGDTGAMGPQ
GPKGYKGDQGAQGFQGKQGDTGATGPTGAMGATGATGNKGDTGHTGATGASGVPGPAGPK
GFPGRNGEAGEAGAAGAPGPRGPVGPTGAAGTPGLKGHPGLPGAPGQAAKGILGPLGPPG
LPGADGQDGSQGPAGPPGPPGPPGEFFFEKSMGMGEVMVPTLVKAPMSAFSVSLAKPYPP
SGEPIKFDNEVYNAENHYDTTTGQFTCQVPGVYFFSYTIHVNGAHALVALYKNDKPVMFS
YDEYNKGFLDQMSGSTVLMLDVNDTVYLQIPDDEANGVFAAENVHCSFSGFLIAST
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaagtacgagtattgagcatcctcatcctcctggtggccttgacggctgttcatggt
agtggttcatatgtggtgaagaaggtgatgaaggtcgcccctcaataccagccctactct
gtgaagagtcacgtggtgtcgatggcgggagagcccggtgcgccaggtgagcccggccca
gaaggcccccctggcccacctggccctccaggggaaagtgctgtgggacagcctggaccc
gagggccctgccggaccacccggacctgctggctactccgcacctggcaaacctggttcc
tcaggtgggcctggtaagcctggtgttcctggcgcagctggtgagaaaggagaggtgggc
acagctggacttcaaggtcctaggggcatgcctggacctgctggaagatccggaccagct
gggatctcttccactggcaagcctggacctcatggtctgcccggagcaatggggccaaga
ggggaaacaggccttaagggacatccaggtatgcctggtttgccaggagctaagggggat
agaggagtgggtatcccaggggcacaaggtgagacaggggctgtgggacctatgggacca
gctgggcagcctggagcagccggagttggaaagccaggcaagtcaggaatccgtggtgaa
gcaggaaagtcaggaagtccaggtagagatgggggcgctggtcccatgggtttgccaggt
gctaagggccacacaggggctcctggtgtaggtatgcctggaaaatcaggtgataatggg
gctccaggtatgcctggtgcagctggtcctaaaggtcatcagggagcaacgggagcaact
ggtgctcccggtatccctggatatggaaagccaggagcaaatggacagaagggtgagagg
ggagttgtaggaagctcaggcacaacaggtcagaagggtgagccaggagcacagggatat
actggtgctactggtgctactgggcccatgggttccactggtcctcagggtggacgaggc
ttccagggagatactggggaaatgggtcccaaaggtgacacaggtgcaatgggaccccag
ggaccaaagggatataagggagatcagggagcacaaggtttccagggaaagcaaggtgat
actggagcaacaggcccaactggtgccatgggagctactggagctacaggtaacaaaggt
gacactggtcacacaggtgcaactggtgcttcaggtgtcccaggacctgccgggcccaaa
ggtttcccagggcgcaatggtgaggcaggtgaggctggagctgctggagccccaggtccc
agaggacctgttgggcctactggtgccgcaggtacacctggccttaaaggacacccgggt
ctccctggcgcacctggacaggccgctaagggaatccttggccctctcggtccccctggg
ctccctggtgctgatggtcaggatggtagccaaggccctgctggccctcccggcccacct
ggtcctcccggcgagttctttttcgaaaagagcatgggcatgggtgaggtcatggtgcct
actcttgtcaaggcccctatgtctgctttctctgtttctctggctaagccttatcctcca
tctggggaacccattaagtttgacaatgaggtgtacaatgcggagaatcactatgacact
accactgggcagttcacttgccaggttcctggagtctacttcttctcatacaccattcac
gtgaatggggctcatgctctggtggctctgtacaagaacgacaagccagtcatgttcagc
tatgatgagtacaacaagggcttcctggaccagatgtccggtagcactgtccttatgctc
gacgtgaacgacacagtctaccttcagattcccgatgatgaggccaatggcgtttttgcc
gctgagaacgtccactgctctttctcagggttccttatcgcttcaacgtga
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