Salvelinus fontinalis (brook trout): 129834615
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Entry
129834615 CDS
T11136
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 7-like isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
sfon03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129834615
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129834615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129834615
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
129834615
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Motif
Other DBs
NCBI-GeneID:
129834615
NCBI-ProteinID:
XP_055755755
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Position
35:complement(25500139..25503989)
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AA seq
470 aa
AA seq
DB search
MAAKAADGGGTTDLIDIYDEKFSQNNGEDGDFATTAEASDLYDDVLTGSVSRERKFSEDA
IPLSKNQPTKEESKPAILYTYSGVWNKRLAVYVGNFSWWTSDKDLINVARTLGVKDIVEI
KFAENRANGQSRGYAEVVVATEESLQRLLETLPNCHVNGEKVDCRFATRQNLAVFEAQAN
KRVPQRSNSKESSDTGDKNASVSPPVLNQNHSTVPHTIHPQHIHNKPPPLSVPYFRLPPP
LFPHLPPHIPPPPMPHLFPPPPLRLPSHPPPSLHLNPAFFPPAQHDNYSQQHNTSYNQHN
SRDSEAPTPQMPEGEFDELMNRNRAIASSAITKAVSGATAGDMPLAIETLLTAIAVIKQS
RVYGDERCRALVTSLKDCLFSIESKSYGSRKRHRSRDREHRSRDRERDRERERDRGRGRE
EREESYSQEWEAAGMSRRHRERSLSGERDGRDRERVRERDRHREHRERHR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaaagcggccgatggtggtggtacaactgatctcatagacatctacgacgag
aagttcagtcaaaacaacggggaggatggagattttgcaacgacagcagaggcaagtgat
ctttatgatgatgtgctcactggctctgtgagccgtgaaaggaaattctcagaagatgct
atccctctcagcaagaaccagccaacgaaagaggagagcaaaccagcaatactgtacact
tacagtggggtgtggaacaagagactggctgtatatgtgggcaacttctcctggtggacc
tctgacaaagaccttattaacgtggctcgcaccttgggtgtgaaggacattgtggagatc
aaatttgctgagaacagagctaatggccagtccagaggatacgctgaggtagtggtggcc
acagaagagtcattgcagaggttgctggagactttgccaaattgtcatgttaatggagaa
aaggtggactgccgctttgccacacgccagaatcttgccgtgtttgaagcccaggctaat
aaacgtgtcccccagcgctctaactcaaaggagtcgtcagatactggggataaaaacgcc
tccgtctcccctcctgtgctcaaccagaaccactccactgtccctcacactatccacccc
caacacattcacaacaaacctccccctctgtcagtcccatactttaggctgccgcctcct
cttttccctcaccttcccccacacatccctcctccccccatgccccaccttttccctcca
ccacctctacgtctccccagccatcctcctccctccctgcatctcaaccctgccttcttt
cctccagcacaacacgacaactacagtcaacaacacaacacatcgtacaaccagcacaac
agcagggacagtgaagcgcccacaccccaaatgccagagggagagtttgatgagctgatg
aacagaaacagagcaatcgccagcagcgccatcaccaaggctgtgtctggagctactgct
ggagacatgcccctggccattgagacgcttttgactgccattgctgtcatcaagcagtca
agagtgtatggggacgagcgctgtcgagcgctggtcacctctctgaaagactgcctcttc
tccatcgagagcaagtcttatggctccaggaaaagacaccgttcccgtgacagagaacac
cgttcccgagatagggagcgagacagggaaagagaacgggacagaggcagaggaagggaa
gaaagggaagagtcttacagccaggaatgggaggctgcaggaatgtcccgtcggcaccga
gaacgctccctaagtggggagagagatgggagagaccgggagcgtgttcgggaacgagat
agacatagggagcaccgcgagcggcaccgctag
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