KEGG   Salvelinus fontinalis (brook trout): 129834707
Entry
129834707         CDS       T11136                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
sfon  Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sfon03036]
    129834707
   03400 DNA repair and recombination proteins [BR:sfon03400]
    129834707
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    129834707
DNA repair and recombination proteins [BR:sfon03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     129834707
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N Sec7-like_HUS Tipalpha HEAT_EZ
Other DBs
NCBI-GeneID: 129834707
NCBI-ProteinID: XP_055755950
LinkDB
Position
1:complement(20454936..20472958)
AA seq 1026 aa
MAAGSALLVGLVEEFVSGQQDSKAADTATGLKAGQFTILQLVEALGLHLASSQPQTRARG
VQLLSNVLQQCHGDLTEREVEVLLAFYENRLKDHYVITPHVLKGLKALTKCSVLPPGSAV
SILKSLFQDVHVQSLMLVERSCVYNILTQLMESRESELKGLGADFVFGFVQSVDGERDPR
NLLLAFQIAGKIIHGGYDLGKFTEELFEVTSCYFPIDFSPPPNDPHGITQEELILTLRAV
LTGTPRFAEFLLPLIIEKLDSDVQSAKVDSLQTLTACASVYEHKELAEFLPGLWASLRRE
VFQTASERVESAGLAALGALTACISRSVLNSDSEDYLNVFLDLVLKDCQHHLCEPDLKLV
WPSAKLLQATSTASYRASHRVAAAIMPSLIEQYNSRTQCAQRRTLLEVLQGFVQPVKSSE
EDESVLLDFRQSLCSIVFSALAENSAGLQITSLRVLTALSQQTVLLLESDVELAVDHLVR
LILEEEDAKVSLAVVECAGALACLHPLAFISKMVPRLKGEIFSESMAQGDSATPSQEHSQ
QAVRQRCLTALAAVSSRPSVVQESTPVLLQVLTSSHTGTGSFSLEEVISVCHNLQRIAEH
AQDTEETGRVFHDIIIPRLLGLALQAAMQGSSDHQSPLVEESVLSAMVPVISTTCARLQS
QLAGQTASRVVSLFLDGDMSFLPENAFPSQIQLLKKQAGDSWSQSQMVCLLMGCVCSLPR
SVEVPQMDRLLLELEELSCTCDHPLSYTSAAKCYAGLVNKRPAGEALDSLIDRMLKRIST
ELDCASSSVRKQAFTLLLWVAKALLLRYHPLSTALTDKLFSLLSDSELGSLAADGFSLLM
SDSPDVLNRGCNADIRIMYRQRFFTENSAKLVQGFNSAAQEKKSGYLKALSHIVNNLPRQ
VQLTELPALLPLLLEALSCPDQAVQLSTLSCLQPVLMDPPSALITQLEALVGRTLTLTTS
PAMKVRIASLRCIHALSRFPEHEIMPFRARVLRGLAVPLDDLKRMVRSEAVVARNEWFLL
GSPGGR
NT seq 3081 nt   +upstreamnt  +downstreamnt
atggctgcgggtagtgccttgctagtgggcttggtagaagaatttgtttcgggacaacag
gacagcaaggccgcagacaccgcaacaggactcaaggctggacagtttacaatactacag
ttggttgaagcgttgggcttgcatctggccagctcccaaccccagacccgagcccgtggt
gtccagctcctctccaatgtcctacagcagtgccatggagaccttacagagagagaagtg
gaagtccttctagcgttttatgagaacagactcaaggaccactatgtcatcacaccacat
gtcttaaaggggttgaaagcgctgacaaaatgctcagtgttgccgcctgggtctgcagtg
tccattctgaaatcactcttccaggacgttcatgtgcagtccctgatgctggtggagcgg
tcatgtgtttacaacatcctaacccagcttatggaatccagagagtcagagctgaagggc
ctgggtgcagactttgtttttgggtttgtccagtcagtggatggggagagggacccacgc
aatcttctcctggccttccagatcgctgggaaaatcatccatggaggctatgatctgggt
aaattcacagaggagctgtttgaagttacctcctgctatttccccatagacttcagcccg
ccacccaatgacccccacggcatcacccaggaagagctcatcctcaccctgagggccgtg
ctcactggaacaccacgctttgcagagttcctgctgccgctgatcattgagaagctggac
tccgatgttcagagtgccaaggtggactccctgcagaccctgactgcctgtgcttctgtg
tatgaacataaagagctagccgaattcctaccaggcctttgggcctcgctgcgcagggag
gtgttccagacagccagtgagagggtggagtccgctggtctagctgccctcggtgccctg
acagcctgcatctcccgctccgtcctcaactctgactctgaagactacctcaatgtcttc
ctcgacttggtcctcaaagactgtcagcaccacctgtgtgagccagacctgaagctggtg
tggcccagcgccaagctgctgcaggccacctctaccgcctcctacagggcgagccacaga
gttgcagccgccatcatgccgtccctcatagaacaatacaacagccgaacgcagtgtgct
cagcggcgcaccctactggaggtgttacagggcttcgtccagccagtgaagtcttcagag
gaggatgagagtgtgctgttggacttcaggcagtctctttgcagtatagtgttctctgcc
ctggctgagaacagtgctgggctccagatcacatcactgcgtgtgctcactgccctgagc
caacagacagtcctgctgttagagtcagatgtggagctggccgttgaccacctcgtcagg
ctcatcctggaggaggaagatgctaaagtcagcctggctgtggttgagtgtgcaggggct
ctggcttgtctgcaccctctagccttcatctctaagatggttccacggctgaagggggag
atcttctcagagtccatggcacaaggtgacagcgccacgccgtcccaggaacattcccag
caggccgtacgtcagcggtgtttgacggcgctggctgcggtgtcgtcccggcccagtgtg
gttcaggagagcacacctgtcctgctacaggttctcacctcctcacacactggcactggc
tcattttcattggaggaggtgatctctgtgtgccacaatctgcagaggatagcagagcat
gcccaggacactgaagagaccggccgtgtcttccatgacatcatcattccgcgcctgctc
ggactggccttgcaggcagctatgcaggggtcctcagaccatcagagtcctttagtggag
gagtctgtcctatcagccatggtaccagtcatcagcaccacctgtgcccgactacagtcc
caactggcgggccaaacagcctcgcgggtggtgtccctcttcctggatggggacatgtcc
ttcctgccagagaatgccttcccctcccagatccagctcctcaagaagcaggcaggtgac
tcctggagccagtcccagatggtgtgtcttctaatgggctgtgtgtgttcgctgccacgg
agtgtggaggttccacagatggataggctactgttagaactggaggagctgagctgtacc
tgtgaccatcccctctcctacacctcagccgccaagtgctacgctgggctggtcaacaag
aggcctgcaggagaagccctggactctctgatagacaggatgttgaagaggatctccact
gagctggactgtgcgtcctcttcggtccgaaagcaggcgttcacgctgctgctctgggtg
gccaaggctctcctcctccgctaccaccctctgtccacagccctgactgacaagcttttc
tccctgctcagtgactcagaactgggttcgttagctgccgatggattctctctcttgatg
agcgactcgccggacgtcctcaaccgcggttgcaacgccgacatacgcatcatgtaccgc
cagcgcttcttcaccgagaactctgccaagctggtccagggctttaactctgcagcccaa
gagaagaagtctggctacctgaaggcactgtctcacatagtgaacaacctacctagacag
gttcagctcactgagctaccagcgctcctgcccctcctgctagaggccctgtcctgtcca
gaccaggcggtgcagctgtccaccctgtcctgcctgcaacctgtcctcatggaccccccc
tccgccctcatcactcagctggaggcgctagtaggccgcactctcaccctcaccacaagc
cctgctatgaaagtgcggatagcctctctgcgctgtatccatgccctctcccgctttcca
gaacatgagatcatgcctttccgtgcgagggtgctgcgtggcctggctgtgcccctggac
gacctcaagaggatggtgaggagcgaggcggtggtggcacgcaatgaatggttcctactg
gggagtccagggggaaggtga

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