Salvelinus fontinalis (brook trout): 129834842
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Entry
129834842 CDS
T11136
Name
(RefSeq) DIS3-like exonuclease 1 isoform X1
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129834842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129834842
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
129834842
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
CSD2
Rrp44_S1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
129834842
NCBI-ProteinID:
XP_055756132
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All DBs
Position
35:39367829..39418626
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AA seq
1067 aa
AA seq
DB search
MIKTEKVLHLKSSRGRRVRVVREHYLREHVPCYSSLCQAQCANEGKVLSGEVTHYVMPDA
GVARDFMEILEFREIQGIVFTQTACQAVQHSRGRRQYNRLRSLLKDPRHHCILFANEFQE
YSYCPREKGEPQDKWQTRCVYHAAVWYHDHLAGLKPVVMITEDQTAVAEYSSLNCGVYVL
CTQEYLQTFWPELQAALELYCSIAQALQEKGSEGTEREYTEHLPAEVLEAGIKSGRYIQG
TLNVNKHRAQHEAFVRFEGSSNKSSELNTDVLLCGGKNRNRAVHGDMVAVELLPKGEWRG
RTTALTEGQGEEKGDETQSQPMATGRVVGILQRNWRDYVVTFPPKEETQSQSRNSQRILA
TPWDQRIPKIRISTQQADKLQDHRVIVRLDSWDSTSLYPNGHSVRVLGRAGELETEVQTI
LIENCIHVPPFSEAQLAEMPVSSPESPWSVDPAEVITRRDLRQTHLVFSIDPRGCEDVDD
TLSIRSLPPGPGGQRLELGVHIADVTHFVKEGSLTDLEARARATTYYLADRRYDMLPAVL
SADLCSLLGGVDRYAMSVMWDLDAQTLAVNKVWYGRTLIQSSYQLYYELAQALLNGEEAE
VPELAQLPPGERDAKLAQLTQALETLTHVARQLRAQRDKGGALELEGVEVRAQLDEDKNI
TALVPRQPLEVHETVAECMIYANHWVARKIQESFPQQALLRHHPPPHQEFFNQLQDSARA
RGFTIDTRSNKALADSLDRAVDPRDPLVNRLLRVMATMAMSNALYFSTGACQVDQYYHYG
LALERYTHFTSPIRRYADMIVHRLLAAAIAMEKGAGPAKALASNKELEEVAQQINNKNRA
AQHAQKVSTELFQCLYFRDKDPETDERCVADAVIYTIRANGMLVFIPQYGLKGAVYLKNR
EGQVVSERQDGGCDWQTGSLQRYLDHITTTTAAGTSTFNLFQHITVRISVQPSRCHSDTI
RLEVVSNRPHQAPETQAQPPQPQGARGRSQLVQEVVRQAEEASQQAEEKRGRAPKLSKEE
REFRQSKCPNLYSLLEEVRELALLDLAACGAGGGGLGAAAQACATSA
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgattaagaccgagaaggtgttgcatttgaagagttcccgaggacggagggttcgtgtg
gttcgggaacattatttgagagaacatgttccctgctacagctctctctgtcaggcacaa
tgcgccaacgaaggcaaggtgctgtctggagaggtgacccactatgtgatgcctgatgct
ggcgtggcgagagactttatggagattctggagtttagagagatccaggggatagtgttc
actcagactgcctgccaggctgtccaacacagcagaggacgcaggcagtacaaccggcta
cgcagcttgctgaaggacccccgtcatcactgtatcctgtttgccaacgagttccaggag
tattcctactgccccagagaaaagggagagccgcaggacaaatggcagaccaggtgtgtg
tatcatgctgcagtgtggtaccacgaccatctggcaggtctgaagccagtagtgatgatc
actgaagaccagaccgctgtggcagagtacagcagcctcaactgtggtgtctacgtcctc
tgtacacaggagtacctgcagacgttctggccggagctgcaggctgccctggagctgtac
tgctccatcgctcaggccctgcaggagaaagggagcgaggggacggagagagagtacact
gaacacctgcctgccgaggtcctggaggctggcattaagtctggtcgatacatacagggc
actctgaatgtgaacaaacacagggcccaacatgaagccttcgtccgctttgagggctcc
tctaacaagagctcagagctgaacactgatgtgctgctgtgtggggggaagaatcggaac
cgggcggtgcacggcgatatggttgccgtggagctgttgccgaagggggagtggaggggg
agaaccacggccctgacggagggacagggggaggagaagggagacgagacacagagccaa
cccatggccacaggtcgtgtggtagggatccttcagaggaactggagggactatgtcgtg
acctttccccccaaggaggagacccaatcccagagcaggaactcccagcgtatcctggcc
acgccctgggaccaacgcatccccaagatccgaatcagcacccaacaggctgacaaacta
caggatcaccgggtgatagtgcgtctggactcgtgggacagcacctccctctaccctaac
ggacacagtgtcagggttctgggccgggctggggagctggagacggaggtccaaaccatc
ctcatagagaactgtatccacgtacctcctttctctgaggcgcagctggctgagatgcca
gtgtcctcccctgagagcccctggtcagtagaccctgctgaggtgattaccagacgggat
ctgagacaaacccacctggtgttcagcatcgaccctcggggctgtgaggacgtagacgac
accctgtccatacgcagcctcccccctggcccggggggtcagaggttagagctgggcgtt
cacatcgctgacgtcacacactttgtgaaagaggggtcgctgacggacctggaggctcgc
gctagggccaccacctactacctggccgaccgcaggtatgacatgctgcctgctgtcctc
agtgcagacctctgctctctgctgggaggggtggacaggtatgccatgagcgtcatgtgg
gacctggatgcccagaccctggcggtgaacaaggtgtggtacggtcgtacactaatccaa
tcctcctaccagctttactatgaactggcccaggctctgctcaacggagaggaggcagag
gtcccagaactagcccaactaccacctggggagagggatgccaagctggcccagctcacc
caggccctggagaccctcacccacgtggccagacagctgcgtgcccagagggacaaggga
ggagcgttggagctggagggggtagaggtgagggcgcagctggatgaggacaagaacatc
acagccctggtgcccagacaaccactggaggtccatgagacggtggcagagtgcatgatc
tatgccaaccactgggtggcccgtaagatccaggagagtttcccccagcaggccttgctg
cgccaccacccgcccccacaccaggagttcttcaaccagctacaggacagtgcccgggca
cgcggcttcaccatagacaccaggtcaaacaaggccctggctgactccctggaccgggct
gtggacccccgggacccgctggtgaaccggctgctgagggtgatggctaccatggccatg
tctaatgccctctacttctctaccggagcctgccaggtcgaccagtactatcactatggt
ctggctctggaacgatacacccacttcacctctcccatccgtcgctatgccgacatgatc
gtccaccgcctgctcgccgcagccatcgccatggagaagggggcggggccagccaaggcc
ttagccagtaacaaagagttggaggaggtggctcagcaaatcaacaacaagaacagggca
gcacagcatgcccagaaggtgtccacagagcttttccagtgtctctacttcagagacaaa
gacccagagacagacgagcgctgtgtggccgacgcggtcatctacaccatcagagccaac
ggcatgctggtcttcataccacagtatggcctgaagggggcagtgtacctgaagaacaga
gagggccaggtggtgagtgagagacaggatggaggatgtgactggcagactggttctcta
cagagatacctggaccacatcactaccactactgctgctggcacctccaccttcaacctg
ttccaacacatcaccgtgcgtatctcagtacaaccatcacgttgtcactcagacacaatc
cgtctggaagtggtcagcaacaggccccaccaggcccccgagactcaggcccagcccccc
cagccccagggggctaggggccggtcccagctggtccaggaggtggttcggcaggcagag
gaggcttctcagcaggcggaggagaagaggggccgggcccccaaactgtccaaggaggag
agagagttcagacagagtaaatgtcctaacctctactctctcctggaggaggtcagggag
ctggccttgctggacctggctgcctgtggagcaggtggtggtggtctgggagcagccgct
caggcttgtgctacgtcagcatag
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