Salvelinus fontinalis (brook trout): 129834891
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Entry
129834891 CDS
T11136
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
129834891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sfon03036
]
129834891
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
129834891
REST complex
129834891
Heterochromatin formation proteins
Other heterochromatin formation proteins
129834891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
129834891
NCBI-ProteinID:
XP_055756229
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Position
35:41411075..41431748
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AA seq
1298 aa
AA seq
DB search
MKRRAEDQEPVFASQQQRRPPVPGTVEGFQHRVIAPAVYEAVTDNMQPSPGIQYSIPQGY
QVPTMPQNSSGHGHASSPAALVGPHPHSPAVQSQGAAVVQSHAHPLAPMAPSQGAQFQRL
KVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMG
FNTFLPPGYKIEVQTNEQVNVTTPGQIHYITPHGISVQNLPVTGPPSQPVPHHQALQPPS
GPPTSTATASTALPTQPTPAKTSKPMQSPALTPTSQPNPSIPSYASPRSPSVQSHAPVSS
TPSSGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGN
YTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVSCPPFLQLLSKTTADRAESVR
NDHGTTVKRPLMNNKQRLNQNGCPIRRHSGAGATPPVKKKPKMLGKDHAMAEASKHSIGT
ESLFFEKVRKALRSSEAYDNFLRCLLIFNQEVISRAELVQLVLPFLGKFPELFSWFKNFL
GYRESSHIESFPKERTTEGMAMEIDYASCKRLGSSYRALPKSYTQPKCTGRTPLCKEVLN
DTWVSFPSWSEDSTFVSSKKTPYEEHIYRCEDERFELDVVLETNLATIRALEAVQRRLSR
MTAEEQVKFRLDNTMGGCSEVIHRKAIQRIYGDKAADIIDGLKRNPSVSVPIVLKRLKMK
EEEWREAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKVFRSKTLLNEIETIYDERQE
QASEDTATVPGGPHITLTYQDSQILEDAAALIIHHVKRQAGIQKEDKYKIKQVIHHFIPD
MLFARRGELSDVEEEEDEEEEEEEDETGPDEDGSKKHNGLAGSGGSTKSKLLFGNTGAQK
LRGLDEVYNLYYVNNNWYIFQRLHQILCLRLLRIYGQAERQIEEDCREREWEREVLGVKR
DKSENPAVQLRLKEPMDIEVEDYYSAFLEMVRNLLDGNMEPTQYEDSLREMFTIHAYTAF
TMDKLIQSIVRQLQHIVSDELCVRVTDLYLSQSTNKATGGALSTQASRATAEGAYQRKAE
QLMSDENCFKLMFVKSQGSVTLTLELLDTEEENSDEPAETERWCDYVGRYLNSDSASPEL
REHLAQKPVFLPRNLRRIRKCQRGWEQLQQAKAATGTSEKSHSAEDLKMECMFKLNSYKM
VYVFKSEDYMYRRTALTRAHQSHQRVHTRLHRRFQGLVDTWAKEHVTSDMATDTRKWLMG
ERREGLLPCTTTQDPQVLYYLKINRYHVTYHGSSSGAP
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgtgcggaggaccaggaaccagtatttgcgtcccagcagcagcgtcgcccc
ccagtcccgggtactgtggagggcttccagcaccgcgtcatagccccagccgtgtacgag
gccgtcaccgacaacatgcagccttcccccggcatccaatactccatcccccagggttac
caggttcccacaatgccccagaactccagtggccatggacatgcctctagtcctgctgca
cttgtcgggccccacccccacagtccagctgtccaatcacagggggctgcggtggtccag
agccatgcccatcctttggcccctatggccccctcacagggtgcccagttccagcgactc
aaggttgaagacgctctgtcctacctggaccaagtgaaactgcagtttgggaatcagcct
caagtctacaacgacttccttgacatcatgaaagagttcaagtcacagagcatcgacact
ccgggcgtgatcagccgtgtctcccagctcttcaagggccacccagatctcatcatggga
ttcaataccttcctgccgccgggctacaagatcgaggtccagaccaacgagcaggtcaac
gtgaccacgccaggtcagatccactacatcaccccgcacggcatctcggtccagaacctc
cccgttacgggaccacccagccagccggtgccccatcaccaggccctgcagccgcccagt
ggaccccccaccagcaccgccacagccagcaccgctctacccacccagcctacaccggcc
aagaccagcaagccgatgcagtctcctgccctgaccccgactagccaacccaacccgtca
atcccatcctacgcctccccacggtccccctcggtccagtcccacgccccggtgagcagc
accccttccagcgggcctcccctgcagaacaaccagcccgtggagttcaaccacgccatc
aactacgtcaacaagatcaagaaccgcttccaggggcagcctgacatctacaaagccttc
ttggagatcctgcacacttaccagaaggagcagcgaaacgcgaaggaggcggggggcaac
tacaccccggcattgacagagcaggaggtgtacgctcaggtggcacggctcttcaagaac
caggaggacttgctctcggagttcggccagttcttaccggacgccaacagttcagtgagt
tgtcccccttttctccagctgctgagcaagaccacggccgaccgggcggagtcggtgcgc
aacgaccacggcaccacggtcaagaggcccctgatgaacaacaagcagcggctcaaccag
aacggctgtccaatcaggaggcattctggagcgggcgccacgcctcccgtcaagaagaaa
cccaaaatgttggggaaagaccatgccatggctgaggccagcaaacatagcatcggcaca
gaatctctcttctttgaaaaggtgaggaaagccctccggagctctgaggcctatgacaac
ttcctgcggtgtctgctcatctttaaccaggaagtgatttctcgtgcagagcttgtgcag
ctagtgctaccgttcctgggaaaattcccagagctgttctcctggttcaaaaacttcctg
ggctacagagagtccagccacatcgagagctttcccaaggagaggaccacagagggcatg
gccatggagattgactacgcttcctgtaagaggttgggctccagctacagggcgctaccc
aagagctacacacagcccaagtgtacagggaggaccccactgtgtaaagaggtcctgaat
gacacgtgggtgtcgttcccttcgtggtcagaggattccacctttgtcagctccaagaag
accccgtatgaggagcatatttacagatgtgaggacgagcgcttcgagctggacgtggtg
ctggagaccaacctggccaccataagagctctggaggcggtacagaggaggctgtcgcgc
atgacggccgaggagcaggtaaagttccggctggacaacaccatgggcggctgctccgag
gtcatccaccgcaaggccatccagaggatatacggcgacaaggccgccgacatcatcgac
gggctcaagaggaacccgtctgtgtccgtccctatagttctcaagaggttaaagatgaaa
gaagaagaatggagggaagcccagagaggatttaacaagatctggagggagcagaatgag
aagtattacctcaagtccctcgaccaccaaggcatcaacttcaagcagaatgacaccaag
gtgttccgctcaaagaccttgctcaatgagattgagaccatatacgatgagcgacaggaa
caggcttccgaggacacggccaccgtgcctggcgggccccacataaccctgacctaccag
gacagccagatcctggaggacgccgccgcgctcatcatccaccacgtcaagaggcaggcc
ggcatccagaaggaggacaagtacaagatcaaacaggtcatccaccactttatcccagac
atgctgttcgcccggcgcggggagctgtcggatgtggaggaagaggaagacgaggaggag
gaggaggaagaagacgaaaccggaccagatgaagacgggtcaaagaagcacaacgggttg
gccggcagtggcggctccactaagtctaagctgcttttcggcaacacgggggcgcagaaa
ctgcgtggcctcgacgaagtctacaacctctactacgtcaacaacaactggtacatcttc
cagcgcctgcatcagatcctctgtttgcggttgttgcgcatctacgggcaggcagagagg
cagatcgaggaggactgcagggaacgggagtgggagagggaggtgctgggtgtcaaacgg
gataagagtgagaatcctgccgtccagctgagactaaaggagcccatggacattgaagtg
gaggactactactctgccttcctggagatggtgcggaacctcctggacggtaacatggag
cccacccagtacgaggactccctcagggagatgttcaccatccacgcctacactgccttc
accatggacaagctcatccagagcattgtcagacagctccagcacattgtgagtgatgag
ctctgcgtgcgcgtgacagacctctacctgagccagagcaccaacaaggccaccggcggc
gccctgtccacccaggcttccagagcgaccgccgagggggcataccagcgcaaggcggag
cagctcatgtccgacgagaactgcttcaagctgatgtttgtgaagagccaaggcagcgtg
accctgaccctggagctgcttgacacggaggaggagaactcggatgaacccgctgagaca
gagcggtggtgcgactacgtgggacgctacctgaactcggactcagcgtctccagagctg
cgcgagcacctggcccaaaagcctgtgttcctccccagaaacctccggcggatacggaag
tgccagagagggtgggagcagctgcagcaggcgaaggcggctacggggacgtcggagaag
tcccacagcgctgaggacctgaagatggagtgcatgttcaaactcaactcgtacaagatg
gtgtacgtcttcaagtctgaggactacatgtacagacgcactgcgttgacccgggctcac
cagtcccaccagagagtccacactcgcctgcaccgccgcttccaaggcttggtggacacc
tgggccaaggaacacgtgaccagcgacatggccaccgacacccgcaagtggctgatggga
gagcgtcgcgagggtctgttgccgtgcaccaccacccaggatccccaggtcctctattac
ctgaaaatcaacagataccatgtgacgtatcatggcagctcgtcaggggcaccttag
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