Salvelinus fontinalis (brook trout): 129836120
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Entry
129836120 CDS
T11136
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129836120
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129836120
NCBI-ProteinID:
XP_055757909
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Position
3:2698964..2727692
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AA seq
1634 aa
AA seq
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MDNLTTTKIVNAGAGGKVVKETVTTTTRVTSLPPKGITNSVIYNQKSVSSSSSSGVSVVE
RKVISQSSGSSSSSYAITSSGGLSSRSGLLSIGGGESTSRAITGGSSSVSVSSSAAAGSV
GGAKSGYGGGSVSKSTTITTIESPSLSPGASGASCAAFRSSGASGTSFGASKTSGSLSVS
GGGLMSSSSSSFVTGSSSGGSSSGFVSSSKGAGAGGGGFVTSSKGAGAGGGGNSFVTGSR
SGSSSGFASSSGTGIGGGDSSSAKMSTGGLGSVTVSTVTKSNYSSLAGAGSGGVKRGGAQ
GSASSSVSYSPTPMERKSMTTTMIARSMGYEGQSSGNSSPEYTRREYAAESTAASAPTRG
RSHSRESEIRCRLQSASPTAKRWTELDDVKRLLKGSRSSSISPPRSPTSTLPIPRKASVE
TRTMPNSSQSGQYDSATLDSVMPSYVWSGPTAGGYGYHSNAINRSPTSTLQHSPTTLTAT
GLHNNLALSSTSMNSGLSASSTVHGMQNNLASTTGGILTANGVNAQTVYGVQKNGTSTGV
STTAVAPSSPTSDEVFAKEYKFMLLEKEKAPVKKETERLIMAKDTGKQFSSAGTAIAYSE
DSLKKEKKKVSSFVEPATARTTETNAGSLMKVSTKDKATYAEIRKDESGGGFWSCCSWLK
WLLGLLLGLLLLLGLLLGLIALAEEVKRLKARVDALEQSSSSSSAHSSRLSSSSAINIID
PLESAYIDKTSSPSSTTLLRSDNGINLGVAAGAGPGSANGPGQDPVALQMAVQQIVRTEL
QSDTVRATLAQSMKGARGEPGTKGDQGGPGVKGDNGFPGLPGPPGQMGHSGQEGPRGPKG
NAGEAGAEGSPGQKGREGQTGSRGEPGPPGFGEKGDKGSPGEPGGPGPAGTAGPVGPKGL
VGGQGATGIPGTPGPQGFRGEAGAPGPKGEKGPAGPPGNKGEPGEKGLRGTSGDPGQRGL
PGPDGANGSKGPAGAPGADGEKGSRGDKGSDGLQGPRGPAGPPGDSGLPGIPGLQGPPGI
AGNPGQPGGKGEAGEPGRIINAAGSSSVAIPGPPGSPGPTGVSGSPGLSGPVGPAGLPGT
PGPRGERGEEGEKGDQGKPGITVQTVETIERRAPAASLPGPPGPPGPPGEPGPQGKGPPG
PEGPQGQPGVGVPGPRGDKGEPGSFVPNSGTFFAGPPGPTGLPGSPGPQGYQGDPGQPGL
PGVPGDPGVGFPGPQGQPGGPGPEGDSGPPGPQGPEGPEGQPGPKGEAGVPGAPGIPGYS
SGGSSRSSPGAPGPPGPPGAPGNDGPPGSGDGTPDVRQYITEYLKSDGVREYMSGPPGPP
GVPGPPGGESVDDLASRVIAYIQSGGIASGVPGPPGPPGAPGGGSTSLNDIISLLQREEV
RQYVIGPPGPAGPPGIPGIPWRGGYGFNTHEVAGRVLTLMNDAEYRGVLGAQGPPGPPGV
PGPAGPQGPAGPSGQAPYSGSGYRLEEVKDYIQSGLRGGMFGPPGPPGPPGPQGNKGEQC
NSGYGHAFDHRTSEGRRLAETETDFSNIAVRVTDYIKYHGLLRDVVENRSQLEKSQVVQG
PPGPPGPPGVPGFSRVFGSHSNITDLMEYIIAHGNIVGPPGRPGQKGDIGHTGHKGERGE
YTLVTNRRKRNVGV
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtgccggtggcaaggtcgtcaaa
gaaacagtaaccacaacaacccgggtgacatcactgccgccaaagggaatcactaactct
gtcatctacaaccagaagagcgtgtcctccagcagttctagtggagtttcagttgtggag
aggaaggtcatctctcagagcagtggcagcagcagcagtagctatgccataacatcctca
ggtggtctctcttcgaggagtgggctgctctctattggaggaggagagtctaccagtaga
gccatcacaggaggcagtagctcagtgtcagtatcctcctctgctgcagccgggtctgtg
ggtggagctaagtctgggtacggagggggatccgtcagcaaatcaaccaccattaccact
atagagtccccctctttatcccctggtgcttcaggggcctcttgcgcagcttttcggtct
tcaggggcttcggggacatcgttcggggcgagcaagaccagcggctccctctccgtttct
ggagggggtcttatgtctagctccagttccagttttgtcactggttccagttctggtggt
tccagttctggttttgtctctagttccaaaggagcaggagcaggaggaggcggttttgtc
actagttccaaaggagcaggagcaggaggaggaggaaacagttttgtgactggttcccgt
tctggttctagttctggttttgcctctagttctggtaccggaatcggaggaggggattct
tctagtgccaaaatgtcgaccggcggcttgggctctgtgaccgtttccacggttaccaag
tccaactacagctctttggcgggggcgggttcagggggcgtgaaaaggggcggggcacag
gggtctgcatcctcttctgtcagctactcccccacccccatggagagaaagagcatgacc
accaccatgatcgcccgctccatgggctacgaaggtcaatccagtggaaactcatctccg
gaatacacaaggagagaatatgctgcagaaagtacagctgccagtgcacccaccagaggg
cggagccacagcagagagagtgagatcagatgcagactgcagagtgcctctcccactgcc
aaaagatggacggagctggatgatgtgaagaggctgctgaaggggagtcgctccagcagc
atcagcccccctcgctcccccaccagcaccctccctatccccaggaaggccagcgtagag
accagaaccatgccaaacagctcccagtcaggccagtacgacagtgccaccctggactca
gtaatgccttcctacgtgtggtcaggccccacggctggaggctatggttaccacagcaac
gccatcaaccggtcccccacctccaccctccaacactcacccaccacactcacagccacg
gggcttcataacaacctggctctcagctctacatccatgaactctggactctctgcctct
agcactgttcacggtatgcagaataacctggccagcaccactggcggtatcctaacagct
aatggagtcaacgcacaaacagtctatggtgtgcagaagaatggcacaagcacaggggtg
tccacaaccgcagtggcacccagcagtcctaccagtgacgaggtcttcgccaaagaatac
aaattcatgctgctggagaaagagaaagctcccgtcaaaaaggagacggagagactcatc
atggccaaagataccggcaaacagttctcctctgctggcactgctattgcctattctgag
gactcactgaagaaggagaagaagaaggtgtccagctttgtggagccagctacagccaga
accacagaaactaacgctggatccttgatgaaagtctcaacgaaagacaaagcaacctat
gcagagatacgtaaggacgagtctggaggaggcttctggtcctgctgttcctggttgaag
tggctgctgggcctcctgctgggtcttctgctcctcctggggctcctcctgggactcatc
gccctggccgaagaagtcaaacgtcttaaagctcgtgtggacgccttggaacaatcctcc
agctcttcctcagcccattccagtcgcctctcctcctcctcagccatcaacatcatagac
cctctggagtctgcatacatagacaagacctcctctccctcctctaccacactgctccgc
tctgataatggtatcaatctgggagtggcagcaggagcaggtccaggatcagctaatgga
ccaggccaagaccctgtagctctgcaaatggcagtacagcagatagtcaggactgagctg
cagtccgatactgtacgagcaacacttgcacaatcaatgaaaggagcgagaggagagcct
gggaccaaaggtgaccaaggtggtccaggagtcaaaggtgataatggattccctggccta
ccaggtcctccaggtcagatgggtcacagtggacaggagggcccgaggggacctaaagga
aatgcaggtgaagctggtgcagagggctccccaggccagaagggccgagaaggacaaacg
ggatcacgtggagagcctggtcctccagggtttggagagaaaggggacaaaggttctcct
ggtgaacccggagggcccgggcctgctggcactgctgggcctgtcgggcctaaagggtta
gtgggtggtcagggtgctacaggtatcccaggaactcctggtccacagggtttcagaggt
gaagcaggcgctccaggaccgaaaggagagaagggaccagctggacctccaggaaataag
ggcgagccaggagagaaaggactccgcggaacatcaggtgacccaggtcaaagaggactt
ccaggaccagacggagcaaatggatccaaaggacctgcaggtgctcccggggctgacggt
gaaaaaggctctagaggtgacaagggatcggatgggttgcaaggtcccagaggaccagca
ggacctccaggagattcaggcctcccaggcattcccgggcttcaaggtccaccaggtata
gcaggtaatcctggtcagcctggaggtaaaggcgaagctggagaacctggtagaatcatc
aatgcagctggttccagttcggttgccatccccggacctccgggcagccccggacccact
ggtgtttccggatcccctggactctcaggtcctgttggccctgctggtcttcctggaacg
cctggtcccaggggagaaaggggagaggaaggagagaagggagaccagggaaagcctggt
attactgtacagactgtggaaaccatagagagacgtgcacctgcggctagtcttcctggc
ccacctggccctccagggcccccaggagaaccaggtccccagggtaagggtcccccaggt
cctgaaggtcctcaaggacagccaggtgttggtgtgcccggcccccgaggtgataaggga
gagccaggtagcttcgtgcccaactcaggaaccttcttcgctgggcccccaggaccaact
ggtcttccgggatcaccaggaccccagggttaccaaggtgacccaggtcagcccggttta
ccaggagttcccggagatcccggtgtcggtttccctggaccccagggacaacctggaggt
ccaggaccagaaggggacagtggccctccagggccccaaggcccagagggccccgagggg
caaccgggtccaaaaggtgaggctggtgttccaggtgctccaggaatccctggctactcc
agtggtggatcatccaggagttcccctggagcaccaggtccacctggacctcccggggct
cccggaaatgatgggccacctgggtctggggatggaacaccggacgtccgtcaatacatc
acagaatacctaaagagtgacggtgtcagggagtacatgtcgggtcctccgggtcctccg
ggtgtaccggggccccctggtggcgagtcagtggacgatcttgctagtcgcgtcatcgcg
tacatccagagtggaggtattgctagtggggtgcctggacctccaggcccgcctggcgct
cccggtggaggcagtacatcgctaaatgacatcatcagccttctacagagggaggaagtg
cgacaatacgtcatcggtcctcctggccctgctggacctcctggcatcccagggatccca
tggagaggaggctatggctttaatacccatgaggtggctggacgagtactcactctaatg
aatgatgctgaatacagaggcgtcttgggcgctcaggggcctcctggtccacctggtgtt
ccaggccctgctggccctcaaggccctgccggtccttcaggacaggccccctacagcggc
tctggatacaggctggaggaggtcaaggactacatacagagtggtctaagagggggaatg
tttgggcccccaggccccccaggtccccctggaccccagggaaacaagggagagcagtgt
aactctgggtacggccacgcctttgaccacaggaccagcgagggaagaaggctggctgag
actgagacagacttctccaatatagcggtccgagtgactgactacatcaagtaccatggt
ctgttgagggatgtggttgagaaccggtctcagctggagaagtcacaggttgttcaagga
cccccaggaccccctggccctcccggtgtgccaggattcagccgtgtgtttggttcccat
agtaacatcactgaccttatggaatacatcatagcccatggaaacattgtgggaccccct
ggaaggccaggacagaaaggggacataggacatacaggtcacaaaggagagagaggagaa
tacacactcgtgaccaacagaagaaagaggaatgttggtgtttga
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