Salvelinus fontinalis (brook trout): 129836141
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Entry
129836141 CDS
T11136
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129836141
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
129836141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_MROH2B_C
HEAT_2
HEAT_GCN1_C
HEAT_GCN1
TOR1L1_N
HEAT_EZ
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
129836141
NCBI-ProteinID:
XP_055757949
LinkDB
All DBs
Position
37:complement(11749139..11814092)
Genome browser
AA seq
1854 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAVQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKLKEESCADFSPEDSSDRLSFYRFDISRLLKHGASLLGSA
GAEFEVQDDKSGEVDHKERLARQRKLLQRKLGLDMGAAIGMDTMELFNDEDLDTQYTCTP
SGPKAQGRGERGSEPCSSNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRDM
DPNERSNDSFEGEPEEKHRKTSNVVIEQPATEHKVLIDNVPDNSSLLEETQEWPLESFCD
ELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVGSTAEQMARYHQEWLEDVVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTDSGVTMTVDILLKLLTEDQWEVRHG
GLLGIKYGLAVRQDLISALLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGLVQLLPNK
VPFIVNSLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFLRH
TISSVRRAALETLYTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKVWT
ELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINILLEVKSRCKEKAGGKPRQGALV
QVKETVQEYIAGAETVTEDPVTRDYVVTRARLMAAKLLGALCRCICDPQLNSSSQDIRPA
ESLGQLLLFHLNSKSALQRIVVALVLCEWAAVQKVVSAMVQPRLLAILSEQLYYDEIAIP
FTRMQNECKQLIALLADAQIDVRDRLNCSVFTIDQANELVTTIFAESTVGLDMKSKPFHP
LDSKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKREEN
TLVQGYAASFIAKLLQQCATRQPCPNSKIVKNLCSSICMDPLLTPSSACPVPPTQTAKAG
MSEKECMHHMVNKTKGIITLYRHQRAAFVITSKRGPTPKTSKTPATELPPGSTTTTDTDE
NKKPFLVQRRGAEFSLTTVARHFGQELTRSLPYLWEFVVGPLRAVVENNQGIDAKLQLER
GDAAAQELVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCVGVLS
KIATMETMHLFLERVLPWLGCIEDGTKQEGAIEAMACVMEQLDVDIVPYIVLLVVPVLGR
MSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFMEQLLDSRKLE
NYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYLRAQ
EYAKTKAADCTPLPSLVVCPPTLTGHWVDEVGKFCTDEYLNPLHYTGPPTERARLQHQVK
KHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVILSGT
PIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALHR
QVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVEDTISTASIH
EEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQHSPK
LSALKQLLLDCGLGSSGSAEGTEAVVAPHRVLIFCQLKSMLDIVEHDLLKPQLPAVTYLR
LDGSVPTGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQA
MDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSMGTDQLLN
LFTLDKDGKDDKGESSSSGGKASIKNVLDGLGDLWDQQQYETEYNLDSFMHSLH
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcaaggcttgatcgtctgttcatcctgcttgacactggaactacaccggtg
acgaggaaggctgctgccgtacagctgggagatgtggtcaagctccacccgcatgagctc
aacaaccttttgtcgaaggtgttgacatacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaggcagtggaggccattgtgaagaatatcccagagtggaacccgtcaccc
aagctcaaagaagagtcgtgtgcagacttctccccagaagactcctctgaccggttgagt
ttctaccgctttgacatttcccgcctgctcaaacatggtgcttctctgctgggttccgcc
ggtgcggagtttgaggtccaggatgacaagtctggtgaggtggaccataaagagcgtctg
gcccgccagaggaagctgctgcagagaaagctgggactggacatgggtgccgccattggc
atggacacgatggagctgttcaacgacgaggacctggacacccagtacacctgcacgccg
agtggccctaaggcccagggacggggagagaggggctctgaaccctgctccagcaatcac
gtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatgagcaaccga
cagaagaacaaggctaagaggatggccaagctagtggcaaagcaacgatccagagacatg
gatcccaacgagagaagtaatgacagttttgagggggagcctgaggagaagcacaggaaa
actagtaacgtagtcatcgagcaaccggcaacggagcataaagtcttaatcgataacgtt
ccagacaactccagtctcttggaagagacccaggagtggcccctggagagcttctgtgat
gagctctgtaatgacctcttcaacccctcatgggagattcgtcacggagcaggcacaggc
ctcagggagatcctcaagtctcaaggcgctggaggagggaagctggtgggaagcactgca
gaacagatggcgcggtaccaccaggagtggctggaggatgtggtcatccggctgctctgt
gtctttgctctggaccgttttggagattttgtctctgatgaggtggtggctccggttaga
gagacctgtgcccagacactgggcgtggccttgcgccacatgactgacagcggtgttacc
atgacagtagacatcctgctgaagctgctgacggaggaccagtgggaggtccggcatggg
ggtcttctgggcatcaagtatggcctggcagtcagacaggacctgatatccgctctgctt
ccacgggtgctccctgccatcacggaggggctgcaggacctggatgatgatgtcagagcg
gtggcggccgcggccctcatccctgtggtggacgggttagtgcagctactccccaacaag
gtcccattcatagtgaactccctgtgggatgctctcctggagctggatgatctgacagcc
tccaccaacagcatcatgaccctactgtcctctctgctcacctaccctcaagtccgacag
tgcagcatgcagcagtccctaacggtcctcgttcctcgggtctggccattccttagacac
accatatcgtcagttagacgggccgcactagagaccctttacaccctactatccaaagct
gaccagagctgtgcattatggctcaaccaggtcctgcaagacatgctccgacacatcttc
cagtcctgcatcctggagagcaatcaggagatcctggacctcatccaaaaggtgtggaca
gagctgctgcgccaggcccctcagcagtacgtagtagcagccagctgtccctggatgggc
gcctggctctgtctgatgatgcaagcctctcatatccccatagacatcaacatactgctg
gaagtcaagtctcgctgcaaggagaaggctggtgggaagcctcgccagggagccttggtt
caagtgaaggagactgttcaggagtacatcgccggggcagaaaccgtgaccgaggaccca
gtgacgcgggactacgtggtgacacgggctcgactcatggccgctaagctgttgggggcc
ctgtgtcggtgtatttgcgacccgcagctcaattcatcctcccaggacatccggccggct
gagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctgcagcgcatc
gttgtggcactggtcctctgtgagtgggccgccgtgcagaaggtggtgtcagccatggtc
cagcctcgcctgttagccatcctgtcagagcagctgtactacgatgagatcgccattccc
ttcacacgcatgcagaacgagtgtaagcagctcatcgccctgctggccgacgctcagatc
gacgtgcgcgaccgcctcaactgcagcgtgttcactatcgaccaggccaacgaactggtg
accaccatcttcgcagagtccaccgtgggtctggatatgaagtccaaaccgtttcatcca
ctggacagcaagcgccagcaggcccagtccacggtgggcgagaccagtgtggagtggcag
cagctgcacctgcgcgtccacatgttcaccgcctgcgccgtggtcaacctgcaggcgtta
ccagacaagctgaacccagtggtgcgtccgctgatggaggcggctaagcgggaggagaac
accctggttcagggttacgccgcctccttcatcgccaagctgctgcagcagtgtgctact
aggcagccatgtcccaattccaagatcgtcaagaacctgtgttcgtcgatctgcatggac
cccctgctcacgccctcctcggcctgccccgtgccccccactcagactgccaaagctggc
atgtcggagaaagaatgcatgcaccacatggtcaataagaccaagggcatcatcaccctc
taccgccaccagagggcagcatttgtcatcaccagcaagaggggcccaacccccaaaacc
tccaagacccccgccactgaactgccacccggcagcaccacgaccacagatactgatgag
aataaaaagccatttctcgttcagagaagaggtgccgagttctctctgacgacggttgct
aggcactttggccaggagctgacgaggtcactgccctacctgtgggagtttgtggtggga
cctttgagggccgtggtggagaacaaccaaggcatcgatgcaaagctccagttggagagg
ggggatgctgcagcccaggagctggtcaactctctgcaggtgctggaggtcacggctgga
gccatggcccccgagctcaaacctctgttgttggagcacctgccccacctgttcacctgt
ctgcagcacccgtacacggccgtgcgtcacatggcggcgcgctgcgttggtgtgctcagt
aagatcgctaccatggagaccatgcacctgttcctggaacgtgtgctgccctggctgggg
tgcatcgaggacggcactaagcaggagggggccatcgaggccatggcctgtgtgatggag
cagttggatgtggacattgtgccgtacattgtgttgctggtggtgccggtgctgggccgc
atgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttcgccaccctcatc
cgcctgctaccactggaggcgggtatcccggatcctcccaccatgtcggatgatctgatt
cgccagaaggccagagagcgtcacttcatggaacagctgctggacagcaggaagttggag
aactacaagatccctgtgcccatcaaggctgagctccgcaagtatcagcaggacggagtg
aactggctgtccttcctgaataagtacaagctgcatggtatcctgtgtgacgacatgggc
ctgggcaagaccctgcagtccatctgcatcctagcaggggaccactacctcagggcgcag
gagtatgccaagaccaaggcagcagactgcacccccctgccctctctggtggtgtgcccc
cccaccctgacgggtcactgggtggacgaggtgggcaagttctgcaccgacgagtacctg
aaccccctgcactacacaggaccccccaccgagcgagcacggttacagcatcaagtgaaa
aagcacaacctagtagtagcctcctacgatgttgtacgaaacgacattgacttttttagg
aatataaaattcaattactgtatcctcgacgagggccatgtgatcaagaacgggaagacc
aagctctctaaggccattaagcagttggcggccaacttccgagtcatcctatcaggaacg
cccatccagaataatgttctggagctgtggtcgctctttgacttcctcatgcccggcttc
ctgggcacagagcgccagtttgccgcccgctatggcaagcccatcctggccagccgtgac
gccaagagctcgtcacgcgaacaagaggccggggtgctggccatggaggcgctgcatcgc
caggtgctgcccttcctcttgaggagaatgaagaaggacgtgctgcaggacctgcccccc
aagatcatccaggactactactgcaacctcagccctctacaggttcagctgtatgaggac
tttgccaagtcccgggccaaggtcagtgtggaggacaccatctctacagcctccatccac
gaagaggagaagcccaagctgaaggccacgggccacgtgttccaggctctgcagtacttg
cggaagctgtgtaaccacccgggcctggtactgctgccacagcacccggagtacaagcgc
atcacagaccagctggcagcacaacactccagcctccgagacatccagcactcgcccaaa
ctctcagctctcaaacagttgttgttggactgtggtctgggcagcagcggctcagcggag
ggcacagaggcggtggtggccccgcacagagtgctgatcttctgtcagctgaagagcatg
ctggacatcgtggagcacgacctgctcaagccccagctgcccgccgtcacctacctgcga
ctggacggcagcgtcccaactggcctgcgccactccatcgtctccaggttcaacaacgac
ccctcaatagacgtgctgctgctcaccacccacgtgggcggtctgggtctgaacctgacc
ggcgctgacacggtggtgtttgtggaacacgactggaacccgatgagagacctacaggcc
atggaccgcgcacacaggataggacagaaacgcgtggtcaacgtgtatcgtctgatcacg
cgtggcaccctggaggagaagatcatgggcctgcagaagttcaagatgagcatcgccaac
actgtcatcagccaggagaacgccagtctgcagagtatgggcaccgaccagctcctcaac
ctcttcaccttggacaaggatgggaaggacgataagggcgagtcgtcgtcctctggaggg
aaagcctccattaagaacgtgctggacggcctgggggacctgtgggaccagcagcagtac
gaaaccgaatacaacctggacagcttcatgcactcgctccactag
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