Salvelinus fontinalis (brook trout): 129836302
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Entry
129836302 CDS
T11136
Name
(RefSeq) nuclear valosin-containing protein-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129836302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfon03009
]
129836302
Ribosome biogenesis [BR:
sfon03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
129836302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Nucleolin_bd
AAA_lid_3
RuvB_N
AAA_16
AAA_5
AAA_2
AAA_14
AAA_22
AAA_33
TIP49
NPHP3_N
AAA_28
Mg_chelatase
RNA_helicase
AAA_17
nSTAND3
AAA_18
Rad17
TsaE
ABC_tran
NACHT
IstB_IS21
Viral_helicase1
Zeta_toxin
AAA_3
nSTAND_NTPase5
Vps4_C
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
129836302
NCBI-ProteinID:
XP_055758253
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All DBs
Position
37:18715235..18735690
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AA seq
888 aa
AA seq
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MNNRRCGVDNRLKQRVEQYLSNQSGQYVDITSMAHDLQRLYRMDYGRRNKTAFRIQVEKV
HGVICDESGLNDLENKHLAKRARHSEKDAGDGSSNLDDTTDSDEDLPEQPPINLMNNSLM
SLYKKGNPESGASPRRDKSASDSPAPEAQSTPQSVGTKVSAGGWFIDKGRGLEHDSILID
LCEEEAASLAGNKQTDVSMLEPEKTPKKSKFKKSKRRKEGASKGNDGDIEASIMNKKART
KSIELQYSTLKFEDVGGNEDTLTEVCKLLIHMRHPEVYQQLGVVPPRGFLLHGPPGCGKT
LLAQAVAGEMELPMLKVSAPELVSGVSGESEQKLRELFEQAVTSSPCILFIDEIDAITPK
REVASKDMERRIVAQLLTCMDDLNSLAVTAQVMVIGATNRPDSLDPALRRAGRFDKEICL
GIPDEAARLRILKTLCRKLKLPEDFDYRQLARLTPGYVGADLMALCREAAMSAVNRVLLE
RQDKNQGLVPMAEESAESEGPQGAGPLPQGPERFQTSADTMIQEMTDLSHVPQGDKQQLP
LATETTFTGELCRLLSLLKSSESLSEEQLAGLCILMSDFQGSLASVQPSAKREGFATVPD
VTWDDVGALHDIREELTMAILAPVRSPEQFKALGLSAPAGVLLAGPPGCGKTLLAKAVAN
ESGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRRSGHESGA
SVRVVNQLLTEMDGLETRRQVFIMAATNRPDIIDPAVLRPGRLDKTLYVGLPPPSDRHAI
LLTITKGGSRPHLEQDVSLEEMAHDVRSDCFTGADLSALVREASVNALRAYLLTQPNPSY
TGHSYSNGPVADIRVSKQNFEDAFKKVRPSVSKRDQRMYEQLKESLTR
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaataacagacgttgcggagtggacaaccgactcaaacagagagttgagcagtatttg
agtaaccagagtggccagtatgttgacattacttcaatggcacatgatcttcagagactc
tacagaatggactatggcaggcgaaacaagactgcattcaggattcaggtggaaaaagtc
catggagtgatatgcgatgaatctggactgaatgatctggagaacaagcacttggccaag
agagccagacacagtgagaaggatgctggggatggcagcagtaacttggatgacactact
gatagtgatgaggaccttcccgaacaaccgcccatcaacctcatgaataactccctgatg
tccctgtataagaagggcaacccagagagtggggcatctcccaggagggacaagtctgca
tcagacagccctgcccctgaggctcagtccacccctcagagtgttggtaccaaggtgtct
gcagggggctggttcatagacaagggcagaggcctggagcatgacagcatcctcattgac
ctgtgtgaagaggaggcagccagtcttgcaggaaataagcagacagatgtctcaatgctt
gagcctgagaagacaccgaaaaaaagcaaatttaaaaaatctaaacggcggaaagaggga
gcgtcaaagggtaatgatggtgacatcgaggccagtatcatgaacaagaaagcgaggacc
aaatccattgaactacagtattcaacattaaagtttgaagatgttggaggcaatgaggac
acattgacggaggtgtgtaagctgctgattcatatgcgtcacccagaggtgtaccagcag
ttgggggtggtccctccacgggggttcctgctccatggcccccctggctgtggaaaaacc
ctgctggcccaagctgtggctggggaaatggagctgcccatgctgaaggtgtcggcgcca
gagctggtgtctggggtatcaggggagtctgagcagaagctgagagagctgtttgagcag
gctgtgaccagctccccttgcatcctgttcatcgatgagattgatgccatcactcctaag
cgagaggtggcctccaaggacatggagagacggattgttgctcagctgctcacctgcatg
gatgacctgaactcattagctgtcacagcccaggtgatggttattggtgccaccaaccgg
ccagactctctggacccagcgctgcgccgtgctggacgctttgacaaagaaatctgtctg
gggatacctgatgaagcagctcgtctcagaattctgaagaccctgtgtcggaagctgaag
ctccctgaggactttgactaccggcagctggcgcgtcttaccccggggtacgtgggagct
gacctcatggcgctgtgccgcgaggccgccatgagcgccgtcaacagggtcctgctggag
aggcaggacaagaaccaggggctggtccccatggcagaggagagcgcagagtccgagggg
cctcagggcgcaggtcctctcccacagggcccagaaagattccagacctcagcagacaca
atgatccaggagatgacagaccttagccacgtaccacagggagacaagcagcagctgcct
ctggctactgagacaacctttacgggggagctttgtcgcctgctgtccctgctgaagagc
agtgagtcgctgtctgaggagcagcttgctggcctgtgcatcctcatgtcagacttccag
ggttccctggccagcgtacaaccttctgccaagcgtgaaggcttcgccacggtgccagac
gtcacctgggacgacgtgggggccctgcatgacatccgcgaagagctcaccatggccatc
ctggcccctgtgcgttctcctgagcagttcaaagctctgggtctcagtgctcctgcaggg
gtgttgctagctgggcctcccggatgtggaaagaccctgctggccaaggctgttgccaat
gagtcaggacttaacttcatctctgtcaaggggccagagctgctgaacatgtatgtggga
gagagcgagcgggccgtgcgacaggtgttccagagaggacggaactctgccccttgtgtc
atctttttcgacgagatcgatgcactgtgcccccgccgctccgggcatgagtctggagcc
agtgtccgtgtggtcaaccagctgcttactgagatggacggactggagacccggcggcag
gtcttcatcatggcggctaccaatagaccagatatcattgaccctgctgtgctgagacca
ggtcgtctggacaagaccctgtatgtgggtctcccacctccatcagaccggcacgccatc
ttactcaccatcaccaaggggggcagcaggcctcatctggagcaggatgtgagtctggag
gagatggcccatgacgtgcgcagtgactgcttcactggggcagacctgtctgcgttggtg
agggaagcctctgtcaatgctctgagagcctacctcctgacccaacccaacccatcttac
acaggtcacagctactccaacggccctgtggccgacatcagggtcagcaagcagaacttt
gaggacgccttcaagaaagtacggccgtctgtgtctaaaagggaccaacgtatgtacgag
cagctaaaggaatctcttacaaggtga
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