Salvelinus fontinalis (brook trout): 129837172
Help
Entry
129837172 CDS
T11136
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129837172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129837172
03036 Chromosome and associated proteins [BR:
sfon03036
]
129837172
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129837172
Coactivators
SAGA/TFTC/STAGA complex
129837172
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
129837172
STAGA complex
129837172
TFTC complex
129837172
SAGA complex
129837172
SLIK complex
129837172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Nbas_N
Motif
Other DBs
NCBI-GeneID:
129837172
NCBI-ProteinID:
XP_055759070
LinkDB
All DBs
Position
3:complement(6632689..6636781)
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSCILYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGATGAATTAPNSTSSWSGADGPDRGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagacttcgcaattttctc
tcagaagcggtgttgccatggggccaggaggtgagctgcatcctgtacccgctcttcgtt
tacctccacttggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttcctcgaccac
aagtatgtggtgaacctgacagagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtactctctgcagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcactgactaccagctgtacgggacgacgggtgcgggagctaccggggccgcc
accacggcccccaactctacctcctcgtggtcgggcgcggatggccctgaccgaggagag
gcggcgggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtacgtgaggggccgccgtcactcacaaccgtgtgcttctac
gccttccagcacacggagcagctactgaacacggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagctcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccacaccggaccgacgtgtcacacatccgactagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttccttacagatagctcgggcctgctatcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccccctgaggctctac
gccggccacctagcggacgtggactgcgtcaagttccaccccaactcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccccgtgttgtccgtagcctttgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccaacgggtgaagctgtgggacttggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagggtgtgggacatccgaaactcc
cacgggacgacccacgcggatggctcgtccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgcttctggtgacgggaaca
gcgcaggagaaacatggacagtag
DBGET
integrated database retrieval system
