Salvelinus fontinalis (brook trout): 129837962
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Entry
129837962 CDS
T11136
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129837962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129837962
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129837962
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129837962
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129837962
NCBI-ProteinID:
XP_055760534
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All DBs
Position
38:6532641..6544176
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AA seq
958 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLSFSSSANSGSSSSSSLVSMAAVVGG
NPGVPTSNSLIGSFSSAVQQHQLQSPQQPVLQPLLQPQQPQTKPCTPSPPSHPLLSTAPS
LPTPTTPISASPNSLPQVSSGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSASL
NTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGLGL
LGSSPAHGSLTGGILGLVPGQSVILGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGVV
GSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQSMDNGP
SLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQA
PEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGSS
AAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERIR
QYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQS
WRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtcgctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagactggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccgacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgtccttttcctcgtcc
gccaattccgggtcctcttcttcctcctctcttgtatccatggccgccgttgtcggaggc
aaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtgcaacaa
catcagcttcaatctccacagcaaccagtcctgcagccactgctacaaccacaacaaccc
caaacaaaaccttgcacccccagcccacccagccaccccctcctctccaccgccccctct
ctccccacacccactacacccatctcagcctccccaaactccctgccccaggtctcgtct
ggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggaatgacg
gggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctctctg
aacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagccgcg
ttgggaggcctgggtctgagtaccaccacccagtccagtgtctcagtggagagctcctcc
atccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggccta
ctgggttccagcccagcacacggctccctgactggggggatcctgggcctggtgcctggg
cagagtgtgatccttgggccccctctgatccctctcagcccggtcggtgctgcccctggg
ggggccgtggggatgatgggaggaaacggtggaagcatggggccaatcggaggagtagtt
gggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaagcacaagt
tacagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaatca
cagagcagccagccttcctcgctgacctcctcagccagtcagtctatggacaacggtccc
agcctcatcagctccatcaccttgccccccagctctccgtccccctcgttttcggacagt
atccctggtggtgggagtctcctcaacggaccccactcctacacacaggcctctgagggc
ctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcaggcc
ccagagccgccaggggccatggctacagccactaacacacgaaagagaaagcagtgtcag
gccccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatcaggt
ctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcgtcg
gctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatcccccct
tccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccagcag
accatgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatcagg
caatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccccac
cactcagactctatagagttctaccagagactgtccacagagactctcttcttcatcttc
tactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcagtcg
tggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagactatc
actgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcagagg
aagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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