Salvelinus fontinalis (brook trout): 129838027
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Entry
129838027 CDS
T11136
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129838027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129838027
03009 Ribosome biogenesis [BR:
sfon03009
]
129838027
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129838027
Spliceosome [BR:
sfon03041
]
Complex A
U1 snRNP components
U1 related factors
129838027
Complex B
129838027
Ribosome biogenesis [BR:
sfon03009
]
Eukaryotic type
Pre-60S particles
Helicases
129838027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129838027
NCBI-ProteinID:
XP_055760670
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Position
3:complement(8923606..8931352)
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AA seq
629 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQS
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGSYRDKDSDRGFGGGPKSAFGAKTQNGVGY
GGSTYDKGASSGGSYGNSYGSNGQASFGATNQVGAFGGQNFQAPPQFGAAQAAAPNGMGR
PPFPFNPQAQQPQQPPPMVPYSMPPSFPQ
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggcagagacagggggtatggaggtgcgcctcgt
tttggaggtggcggtggtggcagtaggggtggaccccctcaggggaaatttggcaaccca
ggtgaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaaaaac
ttctaccaggagcacccggatgtgacccgcagaccacctcaagaggtggagaactacctg
agaagtaaagacgtaacagtgaaaggcagagactgccccaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtacggcagggcctcccgcctgaag
tcagtctgtgtctatggtggagcccccaaaggaccccagattcgggaccttgagagaggt
gttgagatctgtattgccaccccagggcgtctcattgacttcctggaggctgggaagacc
aaccttcgcagatgtacctaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattagaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctggctgaggacttcctgaagcagtct
gtccaaatcaacgtgggcgctctgcagctcagcgccaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggagagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccatcatctttaccgagaccaagagacgctgcgatgagcta
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgatgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acaggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagctcctccagatggcagaggcc
agaggaggtcgtggaggggggggaagaggtggctttagggatgacagacgagataggtat
tctggggggaggagttacggtggtggtggtggtagttacagggacaaggatagcgacagg
gggttcggtgggggaccaaagagtgccttcggcgcaaaaacccaaaacggagtgggctac
gggggtagcacttatgacaagggcgctagctctggcggtagctacggcaacagctacggc
agcaacggacaggctagcttcggcgccaccaaccaggtgggtgcgttcggcggccagaac
ttccaggcccctccacagtttggagccgcgcaggcggctgccccaaacggcatgggtcgc
ccgccattcccctttaacccacaggcacagcagccccaacaacccccacccatggtaccc
tactctatgcctccatctttcccacagtaa
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