Salvelinus fontinalis (brook trout): 129838387
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Entry
129838387 CDS
T11136
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
sfon03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129838387 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129838387 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129838387 (cpsf6)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
129838387 (cpsf6)
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GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
129838387
NCBI-ProteinID:
XP_055761285
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Position
39:27453147..27474497
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AA seq
644 aa
AA seq
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MADGVDHIDIYADVEEDFNQESDYPAHDQIDLYDDVISPSANNNGDAPEDRDYLDNLPPP
AGSEGNKSTSPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIGSIGIKDLLEIKFFENRA
NGQSKGFALVCVGSDASSRKLLDLLAKRELHGQNPIVTPCNKQSLSQFEMQSRKSTSGGQ
MSGDGKAGPPTMGPRGGFPMGMGRGRGRFPGPPGPGGERFPGPIGPGGPPPHFPGSGMRP
PELINHRHQEGHLMDMNFNCFPPGRDGNWRPRGGMQGPPRPPLGPLGPPGPLGPPPPGQG
LPPPMQGPPNRGDRPPPPVMFPGQFGQPPMGPLPPGPPPHGFGPPPGPPPPQQGPPPPGH
FPPRPPGPLGPPLALAPPPHMTGPRPGGPPPAPHVNPAFFPPPGGPNNMGGPPGGDGRGP
NGPNDPYGRPPPYDRGDFGPAGSNQRPPLICEFDLRAPLPRGCPDPWINEGLVDLKNGGQ
HLHNASDPGEMESARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTA
ISLIKQSKVSADDRCKVLISSLQDCLHGIENKSYGSASSSAPKRRERSRERDHSRSREKS
RRHKSRSRDRHEDYYRERSRERERHRGERERERERDREREYRHR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggagttgatcacatcgacatctacgccgatgttgaagaggatttcaaccag
gaatcagactaccctgcccatgaccagatagacttgtatgacgatgttatctctccttcg
gcaaataataacggagacgcacctgaggaccgggactacctggacaacctacccccacct
gctggctccgaggggaacaagagcacctcgcccaacgtagtttacacgtacactggcaag
aggatcgccctgtacataggcaatctcacatggtggacgacagacgaagatttgacagac
gccattggatcaataggcattaaggatctgctggagatcaagttctttgagaacagagcc
aacggccagagtaaagggtttgccctggtgtgtgtgggctcagacgcgtcctctaggaag
ctactggacctgctggctaaacgggagctacacggacagaaccccattgttaccccctgc
aacaagcagtccctcagccagttcgagatgcagtctcggaaaagtacatcgggtgggcag
atgtccggcgatggtaaggcgggaccccccaccatgggcccccgcggtggcttccccatg
ggtatgggtaggggccgaggccgcttccctggccctcctggccctggaggagagcgcttc
cctgggcccatcggacccggagggccaccaccacacttcccagggtcggggatgaggcca
cctgaactcattaaccatagacaccaagaaggccacctgatggatatgaatttcaattgc
ttcccgccgggacgtgatgggaattggcgacccagaggcggtatgcagggcccacctcga
ccccctcttgggcctctaggtccccctggtcccctaggcccccctcccccaggacagggc
ctcccccctcccatgcaaggcccccccaaccgtggcgaccgccccccacccccggtcatg
ttccccggccagttcggccagccccccatgggtcctctcccccctggccctcccccacac
ggcttcggccctcctcctggccccccacccccccaacagggccctccaccccctggtcat
ttccctcctcgcccacctggtccccttggaccgcctctggccctcgctcccccaccacac
atgaccgggccccgacctggaggccccccaccggctccccatgtcaacccagcgttcttc
cctcctcctgggggtcctaacaacatggggggccctcctggaggagacggcaggggcccc
aacgggcccaacgacccctatggacggccacctccatatgaccggggagacttcggaccc
gccggcagtaaccagcgtcccccgctaatctgtgagtttgacctcagggcccccctgccc
cgcggctgcccagacccctggattaacgagggtttggtcgatctgaaaaatggcggccag
cacttgcacaatgcgagtgacccaggggagatggagtcggcgaggacaccgctgagcgag
gcagagtttgaggagatcatgaaccggaacagagccatctccagtagtgccatctctagg
gcggtgtcagatgctagcgctgctgactatggcagtgccatagagactctggtgacagcc
atctctctgatcaagcagtctaaggtgtctgctgacgaccgctgtaaagttctcatcagc
tctctacaggactgtctccacggcatcgagaacaagtcctacggctctgcctccagttct
gcccccaaaagacgcgagaggtcgagggagcgtgaccacagccgatcccgggagaagagc
cggcgccacaagtcccgtagccgcgaccgccacgaggactactaccgcgaacgcagccgg
gagagagaacggcaccgcggggaaagagaacgagaacgcgaacgtgaccgcgagagggag
taccgacatcgttag
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