KEGG   Salvelinus fontinalis (brook trout): 129839144
Entry
129839144         CDS       T11136                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    129839144
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfon03021]
    129839144
   03036 Chromosome and associated proteins [BR:sfon03036]
    129839144
Transcription machinery [BR:sfon03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     129839144
   Coactivators
    SAGA/TFTC/STAGA complex
     129839144
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     129839144
    STAGA complex
     129839144
    TFTC complex
     129839144
    SAGA complex
     129839144
    SLIK complex
     129839144
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_Aladin WDR90_beta-prop_4th NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_HPS5 RMC1_N Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR19_1st Tricorn_2nd Beta-prop_VPS8 Beta-prop_WDR75_2nd PEP5_VPS11_N WD40_like PROPPIN WD_LRWD1 Beta-prop_ELP1_1st Lysis_col Cytochrom_D1
Other DBs
NCBI-GeneID: 129839144
NCBI-ProteinID: XP_055762397
LinkDB
Position
40:complement(19758348..19763182)
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHGLFLGDAEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTQVQVEVTSSPRTDYQLYGATGAGAAGAATTAPNSTSSWTGADGPERGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSVVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDLDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaggcagcattgccatggggccaggaggtgagctgcgtcctgtacccgctcttcgtt
tatctccacctggacatggtgcgctgcagcctgaagggggcggtggacggcttctacagc
cgcttccacggcctcttcctgggggacgccgagcaacgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgttaacgccaaccctaagctcctggccttccttgaccac
aagtatgtggtgaacctgacagagccggcctacagttacttgttacgctatctgcagagc
gaagacaacagtaccctctgtagggccctcagcacccaagtccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtatggggcgacgggtgcgggagccgctggggccgcc
actacggcccctaactctacctcctcgtggacaggagcagatggccctgagcgaggggag
gccgcaggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggtcgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgcggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagctttaccaacacggccctctaccagggc
cacgcctaccctgtctgggacttggacgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccccctgaggctctac
gctggccacctagcagacgtggactgcgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagccttcgcgcccaatgggaagtac
ctggcgtcagcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgactcacgcggacagctcgtccagcgagctggtggggctctacacgggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgactggaacg
gcgcaggaaaaacatggacagtag

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