KEGG   Salvelinus fontinalis (brook trout): 129839392
Entry
129839392         CDS       T11136                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    129839392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfon03021]
    129839392
   03036 Chromosome and associated proteins [BR:sfon03036]
    129839392
Transcription machinery [BR:sfon03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     129839392
   Coactivators
    SAGA/TFTC/STAGA complex
     129839392
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     129839392
    STAGA complex
     129839392
    TFTC complex
     129839392
    SAGA complex
     129839392
    SLIK complex
     129839392
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz TFIID_NTD2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML_2 EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_DCAF12 Tricorn_2nd Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_WDR19_1st LisH_PAC1 LisH_TPL VID27
Other DBs
NCBI-GeneID: 129839392
NCBI-ProteinID: XP_055762788
LinkDB
Position
40:19473076..19479811
AA seq 749 aa
MAAVQDGQHNLEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADADDSPVSESAEAGSGGVPNVGADGGDANSLLSRV
SIATPVAPPATAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVMYPLYYNGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILRSMSKKEH
MKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTRFHPNANYVATGSADRT
IRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDSRVLLWDVGHGLMVGELKGH
TDTIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLL
GTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq 2250 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaagatggtcagcacaatctggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaatatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctcctgcgggatcgggtgaagatcaacagacactgctcgcg
gtgttgcaatttctcaagaggaataaattgaccgagtcggtcgatattttgcggcgagaa
gcgggcttatctgcagatgcagatgattccccggtatctgagtcggcggaagctggatcg
ggtggcgtcccaaatgtcggtgctgatgggggggatgccaactctctcctcagccgagtg
tcaatagccaccccagtcgcacccccggccaccgcacccccgaaagtggtggcagcatca
ggtggggaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggac
cctgtcatgtacccactctactataacggcctgaagaagtttattgagtctgtcctggac
tgccacagagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggag
ctggtctacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgac
caggagtgttactacgaggaggacctccgcatcctccgcagcatgtccaagaaggaacac
atgaagggaaatgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcc
cgagactcctaccagctgctgaagaggcacctgcaggaacgtcagaacaaccagatctgg
aatattatacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagt
cagattgatgccatgtcgggcagtctggctggggagggcaagagagatgccaacaaagcc
aaggtgttctatggtcttctgaaggagccagagatcgaagtacctctggatgatgaggat
gaggaggcagagaacgaggagggcaaacccaagaagaagaaacctaagaaggacagcatg
ggctccaagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctcccc
gagctgaaggactctgacaagctggacaagatcatgaacatgaaggaggccactaagaag
atccgtctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttac
cagggtctgacagcggtggacttcacagatgactccagtctgatcgcagggggcttcgct
gactccaccgttagggtgtggagcgtcaccccgaagaaactacgccgggtcaaatctgca
gcagacctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgag
aagacggccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagc
ttcagccctgacaggaactacctgttgtccagctctgaggatggtacggtcagactgtgg
agtctgcagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggac
actcagttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgt
ctgtgggcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatc
acgtgcacccgcttccaccctaacgccaactacgtggccacgggctcagctgaccgtacc
atccgcctctgggacgtcctgactggcaactgtgtccgcatcctcacgggtcacaagggc
cccattcattccctagccttctcccccaatgggaagttcatggcctcgggagcaactgac
agcagggttctactgtgggatgttggtcacggcctgatggtcggagagctgaagggacat
actgataccatctacgccctcaagttcagcagggacggagagatactagcctcaggctca
atggataacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggat
gacttcaccgcggcaacaggtcacatccatctaccagagaactcccaggagctgttgcta
ggcacctacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaaccta
ctgctggctgcaggggcctacaacccatga

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