Salvelinus fontinalis (brook trout): 129840539
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Entry
129840539 CDS
T11136
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
129840539
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfon01009
]
129840539
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129840539
Protein phosphatases and associated proteins [BR:
sfon01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129840539
Cell adhesion molecules [BR:
sfon04515
]
Cadherins
Protocadherins
129840539
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
129840539
NCBI-ProteinID:
XP_055764450
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Position
41:complement(131764..142049)
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AA seq
893 aa
AA seq
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MLNKTGPGLSSRGVLWGLCILLLYTSPLSSFANFSQAKELVYKIKEGLPSGTLIGSMGSD
LHLDLSLDPHVSFNLPQKKPSDQYVTLNSTTGQLFTSGNEIDRETLCPDASEYNEGCVLS
LDVFVLPQQYFQLVKVKILVEDVNDNRPRFPTGEIRVSVPENTQVNARFAVEQSATDPDL
GFHGVQTYWLVNDFGVFTLDVEENEGGELTPFLIVTDELDRERQDEYVTDIIAEDGGLPP
LLGTATLRIIITDVNDNCPQFTESQVNVTLYGNTTKGEHLSRLHAFDPDQGANAVISYAY
SDRVPREARALFHLDRITGVIKLAGQINTATGKFYKLTVLANGPGCVPAVAMVTVHVIRV
ASGPPVITPRYIAAEKDGVVTMKESEPSFSPIAFFTVKNTDQRGQGTECLLEGSGPFRLS
PYKLFKNEYLLETTEPLDYEQRQDYELTVVLRNPTGLVINTFIKILVLDENDNAPVFKQS
LYEVSIEENNPPNSFLSQLQATDQDSEARGEVIYLLGSDAPSVFLLDRLTGVLTVSTSLD
REEKQTFRFMVRAVDRGTPRRETIATVVITVLDRNDNSPRFINKDFTFFVPENFPGFGEI
GVLSVTDADAGENGWVALSILNGSDIFVIDTGRGALRARTPLDREQQGTYYLWIEAVDGG
EPSLSCLTMVTVLLLDVNDNPPVVLFPQSNQSYMLVLPSTLPGTSVTEVYAVDKDTGMNA
VMAYSIIKRKGDEPGSFDIDPDTGNITLNRELSGRGLYSLLVKVSDHGQPEPLHSTVLVN
LFVNETVSNESYIQSLLSGEAEIQTEEKPWYVGKLTERPDREDVLPCQPLLVALSVTCLG
LFCIVVTLTAYICCKKLKKWKKHQMKRLEVETPLKTNGDLQDVDRKRMEISNI
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgctcaataaaacaggacccggacttagctcgagaggagtactttggggtttgtgcata
ctcctcctttacaccagccctctctcctcttttgctaatttcagccaagcgaaagagctg
gtctataaaataaaagaaggattaccctcagggacactcataggatccatgggctccgac
ttacacttggatttatccctcgatccccatgtttcattcaatctgccccagaagaagcct
agtgatcagtacgtcactctgaacagcactacgggacagctgtttacgtctgggaatgag
atcgacagggagacgctctgcccggacgcctcagagtacaacgagggctgcgtcctctcc
ctggatgtgttcgttctaccccagcagtacttccagctggttaaggtcaagatcttggtc
gaggatgttaacgataaccggccgcgcttcccgacgggcgagattagggtttccgtcccg
gagaacacccaggtcaacgcgaggttcgcggtggagcagtcggcgacggaccctgatctg
gggtttcacggggtccagacttactggctggtcaacgacttcggggtgttcactctggac
gtagaggagaacgaggggggtgagctgacacctttcctcatcgtgaccgacgagctggac
cgggaacgacaggacgagtacgtaacggatattatagcagaggacggcgggttaccacct
cttcttggcaccgccacgttacggattataatcactgacgtcaacgataactgtcctcag
ttcacagagtcacaggtcaatgtgacgctctacgggaatacgactaaaggagagcacctg
tccaggttacacgccttcgaccccgaccagggcgccaacgccgtaatcagctatgcgtac
agcgaccgcgttccccgggaggctagagctctgttccatctggaccggattaccggggtg
atcaaactggccggtcaaatcaacaccgcaaccgggaagttctacaagcttactgtcctc
gccaacgggcccgggtgcgtccctgccgtcgccatggtaacggtgcacgtgatccgggta
gcttccggtccgccggttattacgccgcgctacatcgcggcggagaaagacggtgtggtc
acgatgaaggaatccgaaccgtcgttttcgccaatcgcgtttttcaccgtgaagaacacg
gaccagagaggacaggggacggaatgcctgcttgaaggatctggcccgttccgactgtca
ccttacaaactgtttaagaacgagtatctgttagagacgacggagccgctggactacgag
cagaggcaggactacgagctgactgtagtgctcaggaatcccacaggtctcgtcatcaac
accttcattaagatcctggttctggatgagaacgacaacgcgccggtcttcaaacagtct
ctgtatgaggtctctatagaggagaataaccctcccaacagcttcctgtcccagctccag
gccacagaccaggacagtgaggccagaggagaggtcatctacctgctggggtcagacgct
ccctccgttttcctcctggacaggctgaccggtgtgctgactgtgtccacatctctggac
cgagaagagaagcagaccttcaggttcatggttcgggcggtggaccgagggacccccagg
agagagactatagctacggtggtcatcactgtgctggaccgcaatgacaacagcccgcgc
ttcatcaataaagatttcacgttctttgtgccggagaatttcccggggtttggagagatc
ggcgttctctcggtaacggacgcggacgcaggcgagaacggctgggtggcgctctccatc
ctcaacggcagcgatatcttcgtgatcgacacgggacgcggcgctctgagggcccgtacc
cctctggaccgggagcaacaggggacgtactacctttggatcgaggcggtcgacggaggg
gaaccgtctctctcctgcctcaccatggttaccgtcctcctccttgacgtcaacgacaac
cctcccgtcgtcttgttcccccagtctaaccagtcctacatgctggtgttacccagcacc
ctgccagggacctccgtcacagaggtgtacgccgtggataaagacacaggaatgaacgct
gtcatggcctacagcatcatcaagaggaagggcgacgagccgggatcgtttgatatcgac
ccggacaccgggaacatcacgttgaacagagaactcagtggccgcggtctctatagtcta
ctggttaaagtctcggaccacggtcagcctgaacctctccactccacggtcctggtcaac
ctctttgtcaacgagacggtttctaacgagagctatatccagagtcttctcagcggggag
gctgagatccagacggaggagaagccgtggtacgtggggaagctgacagagaggcctgac
agggaggacgtgttgccctgtcagccgctactcgtagctctgtcggtaacctgtctggga
ctgttctgcatcgtcgtcacattgaccgcttatatatgctgcaagaaactgaagaaatgg
aagaaacatcaaatgaaaagactagaggttgaaacgcctttgaagacgaacggtgacttg
caggacgtcgatagaaagcgaatggaaatctcaaacatttga
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