Salvelinus fontinalis (brook trout): 129841904
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Entry
129841904 CDS
T11136
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129841904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129841904
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129841904
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129841904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129841904
NCBI-ProteinID:
XP_055766231
LinkDB
All DBs
Position
Unknown
AA seq
959 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLLSFSSSANSGSSSSSSLVSMATVVG
GNPGVPTSNSLIGSFSSAVQQHQLQPPQQPVLQPLLQPQQPQTKPCTPSPPSHPLLSTAP
SLPTPTTPISASPNSLPQVSSGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSAS
LNTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSMESSSIPTSCSSGVTTNGAGTGLG
LLGSSPAHGSLTGGILGLVPGQSVIPGPPQIPLSPVGAAPGGAVGMMGGNGGSMGPIGGV
VGSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDNG
PSLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQ
APEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGS
SAAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERI
RQYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtcgctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagcaaatgccaaccaa
aaggaaaaatacgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacaatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccgacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgttgtccttttcctcg
tccgccaattccgggtcctcttcttcctcctctcttgtatccatggccacagttgtcgga
ggcaaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtgcaa
caacatcagcttcaacctccacagcaaccagtcctgcagccactgctacaaccacaacaa
ccccaaacaaaaccttgcacccccagcccacccagccaccccctcctctccaccgccccc
tctctccccacacccactacacccatctcagcctccccaaactccctgccccaggtctcg
tctggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatg
acggggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctct
ctgaacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagcc
gcgttgggaggcctgggtctgagtaccaccacccagtccagtgtctcaatggagagctcc
tccatccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggc
ctgctggggtccagcccagcacacggctccctgactggggggatcctgggcctggtgcct
gggcagagtgtgatccctgggccccctcagatccctctcagcccggtcggtgctgcccct
gggggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagta
gttgggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaagcaca
agttacagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaa
tcacagagcagccagccttcctcgctgacctcatcagccagtcagcctatggacaacggt
cccagcctcatcagctccatcaccttgccccccagctctccgtccccctcattttcagac
agtatccccggtggtgggagtctcctcaacggaccccactcctacacacaggcctctgag
ggcctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcag
gccccagagccgccaggggccatggctacagccactaacacacgaaagagaaagcagtgt
caggccccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatca
ggtctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcg
tcggctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatcccc
ccttccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccag
cagaccatgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatc
aggcaatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccc
caccactcagactctatagagttctaccagagactgtctacagagactctcttcttcatc
ttctactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcag
tcgtggcggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagact
atcactgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcag
aggaagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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