Salvelinus fontinalis (brook trout): 129842599
Help
Entry
129842599 CDS
T11136
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129842599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129842599
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129842599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
129842599
NCBI-ProteinID:
XP_055767202
LinkDB
All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MSAEEAADNTTPADASAGDGGGDEEEEWLYGDDDERADEEEAKLTAAVSAPVPATESDEA
AATGNGVEAQEKEPGDDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTA
GARPYGTVGNKLKGVDLEAPGNINGVPVVEVDMETFEEKPWRKPGADLSDYFNYGFNEDT
WKGYCDKQKRLRMGLEVANISSTTSKITVQQGRTGNEKEVSLPIHTSKPDFPTPASLYKS
SMNMNTTRISPPQWTAPPVQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQV
ISEHSSSDAEPNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLIPPPRIPMNVPPP
GFPPPSGPPPSLIPTLDSSGHPGGYDVRPVPPYPFPTGGFPPPMTGGYPPPMPGVVSPWP
PMMDQSKQWDYYPPGPGPGPGPRREDKREKERERPRERPHEREREREHSPSTMAYNSDEE
RYRGYREYQAERGYSGGDRGGGDRGGGERGGVDRGGDRGGGERGGDRGSGGERGGGGGER
HRERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGK
EPSDDMGGDQENQDTME
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaggcggcagacaacacaaccccggcggacgcgagtgcgggagatggc
ggcggagacgaggaagaagagtggctctacggagatgatgatgagagagctgatgaagaa
gaggccaaactaaccgctgctgtcagtgcacctgttcctgctacggagtcagatgaggca
gctgctacaggcaacggagtggaagctcaggagaaggagccaggagatgatgacgacagt
gatagcgacagtgacgatgatgacgatgatgttcgtgtcaccatcggagacatcaagacc
ggagctccacagtacacaacgtatggagtggctcctgttaacctgaacataaagacagcg
ggagccagaccctatggaacagtagggaacaagttaaagggtgtggatctggaggccccg
ggcaacatcaatggagtcccagtggtggaggtggacatggagacattcgaggagaaaccc
tggaggaaaccaggtgctgacctgtctgactactttaactatgggttcaacgaggacacg
tggaagggctactgtgacaaacagaagaggctgaggatgggcctggaggtcgctaacatc
tcctccaccaccagcaaaatcactgttcagcagggcaggacagggaatgagaaggaagtg
agtttacccatccacacgtccaaacctgacttccccactccagccagtctctacaagtca
tccatgaacatgaacactaccaggatctcccccccacagtggactgctccccccgtccag
gacatgtcctactatacgaagaccagcggtacaatcgacgtgattggaggagggactgct
accatcagcagagtggagggacgacgaagacacaacctggagggaaataacatccaggtg
atttcggaacactcgtcgtcggacgctgagccaaaccccaacaagatgccccccttcttc
ccccctggccccctcccccctaacatccctcctcctccattcctcccccctcctcccaac
gtcagccaggctccacctctcatccccccaccaagaatacctatgaatgtccctcctcct
ggtttccctcctcccagcggcccccctccgtctctcatccccaccttggacagcagtggg
catccaggtggatatgatgtccgtcccgttccaccataccccttccccacaggtggtttc
cctcctcctatgacaggtggctaccctcctcctatgccaggtgtggtgtctccatggcct
cctatgatggaccagtctaaacagtgggactactaccctccaggaccgggaccgggacca
ggacccagacgggaggacaagagggagaaggagagagagagacccagggagagaccacat
gagagggagagagagagagagcacagcccctccacaatggcttacaacagtgacgaggag
cggtaccgcggttaccgggagtaccaggcggagcgtggctacagcggcggtgaccgtgga
ggaggtgaccgtggagggggggagcgtggaggcgtagaccgcggaggtgaccgtggaggt
ggggagcgtggcggtgaccgtggcagtggtggtgagcgtggtggtggaggcggggagcgt
cacagagagaggtcgagccgtgagaaggaggagagacacagagagagaagacacagagag
aaggaggaggggagacacaagtcatcacgcagtagcagcaggaggagacatgatagtgaa
gaaggagacggtcacaggagacacaaacacaagaagagcaagagaagcaaggagggcaag
gaacctagtgatgacatgggaggagaccaggagaaccaggacaccatggagtga
DBGET
integrated database retrieval system
