Salvelinus fontinalis (brook trout): 129843294
Help
Entry
129843294 CDS
T11136
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03030
DNA replication
sfon03410
Base excision repair
sfon03420
Nucleotide excision repair
sfon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129843294 (rfc1)
03410 Base excision repair
129843294 (rfc1)
03420 Nucleotide excision repair
129843294 (rfc1)
03430 Mismatch repair
129843294 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfon03032
]
129843294 (rfc1)
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129843294 (rfc1)
DNA replication proteins [BR:
sfon03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
129843294 (rfc1)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
129843294 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_7
RuvB_N
Rad17
AAA_33
AAA_17
AAA_30
AAA_16
AAA_14
BRCT_2
nSTAND3
AAA_18
NPHP3_N
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
129843294
NCBI-ProteinID:
XP_055767891
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MDIRRFFVSSKPAAQKPSQDGTLNTEKESTKKKRKKSVSTDEEVKKKKTAIKITSPKVEK
KKDGDKKRKKRAVIESDSEEEVVEQKQKAQKPNPPLPPAPLPPAKKDPVQYVSETDSDSD
NFLSLKKSQAKPQGNGVTKPGKARTGTKERHRSPPKPTPAPATGKGGIKKSPPAPVTPKS
APPQTKRTPTSVMDYFGSGSVQRSDKKLVASTKRKALSQDRDESLTDEVIAQQLQMDEDM
ELERQVHEDEEFAKTLAMLDQQPHAKKARKDSGEDLGSDTSANKSSANSSRSSATSQSQS
NGRDHNQDVIGPSPKKLPLVKTSSKLSMMKRREEEEEGGGKASVSPKKEILTPSSTDRKS
KPKTGSVTMVTTPTTLKTSPKKESTSPEDSEKKRGNSSAFRSFLNRDGPRALGSKHIPTG
AENCLEGCVFVISGVLESMEREDAKSLIERYGGKVTSNVSKRTTYLVMGRDGGAAKTEKA
EGFGTKILDEDGLLELIRSKPGKKSKYLIAAEAESRTPDTKTCPRTPKQSPKTRSKNPSP
SKPGSASRRGVRVGDSVTPPGRSTGSGVKRGLDLGGKSQSSSSSATPSSPSSAGEDFSLL
WVDKYRPQNLKAVIGQQGDQSQANKLLRWLKNWHTHHAVGGAKPAGRGFGKFTSSKDNGS
SFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKQVIAESLNNTSINNF
YTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKQSRIPIICMCNDRNHQKIRSL
ANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKVPPPALNEMILASNQDIRQVLHNLSMWSA
KDKVMTYDRVKEDANNARKDIKLGPFDVCRKVFSKGEESDHMTLIDKSDLFFHDYSLAPL
FVQENYVHVKPAAAGGDLKSHLVLLSKTADSICDGDLVDRQIRSKQAWSLLPTQAIYSSV
LPGELMRGYMNCFPSFPSWLGKFSSSNKHSRIIQELASHMSLKTLSSRQAVSLDYLPYLR
MALLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSLMEISLWGGQPDPYAKLDPKVKSAFT
RAYNRESHLTPYSLQPIKKGRRGGGVEAELGGEGQEEQPEEEEEEEGVAADAMIKKKAKP
SKEPKKEKTTAGDSGKGKGKGKGKARK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgtgtcaagcaaacccgcagcacagaaaccatctcaggat
ggaaccctcaacacagagaaggaatccacgaagaagaagaggaagaaatccgtctcaaca
gacgaagaagtgaagaaaaagaaaactgccatcaagatcaccagccccaaggtggagaag
aagaaggacggtgataagaagagaaagaagcgtgctgtcattgagtcagactctgaggaa
gaggtagtggagcagaagcagaaggcccagaaaccaaaccctcctcttcctccggctcct
cttcctccggccaagaaagacccggtgcagtacgtctctgagacagattcagacagtgat
aacttcctgtctctgaagaagtcccaggctaaacctcaggggaacggcgtgaccaaacca
gggaaggctcgcaccgggaccaaagagcggcacaggtcccccccgaaaccaacccctgcg
cccgccaccgggaaaggagggataaagaagtctcctccagcccccgtcacccctaaatca
gcgcccccgcaaaccaaacgcacccccacctctgtcatggactactttggcagtgggagt
gtccagcgctcggacaagaaactggtagccagtaccaagaggaaagctctctctcaggac
cgtgatgagtcgctgactgatgaggtcatcgcccagcagctgcagatggacgaggacatg
gagttggagaggcaggtccacgaggacgaggagtttgccaagaccctggccatgttggac
cagcaaccacacgccaaaaaggctcgtaaggactctggtgaggatctgggctctgacacg
tcagccaacaaaagcagcgctaactcctcccgcagcagcgctaccagccaatcacagtcc
aatgggcgggaccacaaccaggacgtgatcggtccgtcccctaaaaagctcccccttgtt
aagaccagttccaaactgtccatgatgaagagaagggaggaagaagaggaaggaggaggg
aaagcgtccgtctctcccaaaaaggagatcctaaccccttcaagcacagacaggaagtcc
aagcccaaaacaggaagtgtaaccatggtgaccacacctacgactcttaaaacctccccc
aagaaagagagcaccagtccagaggattcagagaagaagcgagggaactcatcagccttc
cgtagtttcctgaaccgagacggacccagagccctggggtctaaacacatacccactgga
gcagagaactgcctggagggatgtgtgtttgtgatatctggtgtgttggagagtatggaa
cgtgaggatgctaagtccctgatagagcgatacggagggaaggtgaccagtaacgtcagt
aagaggactacatacctggtgatgggcagagatggaggagcggccaagactgagaaggcg
gaggggtttggaactaagatcctggatgaggatggtctgttggagctcatcagaagtaaa
ccagggaagaaatccaagtacctgattgctgccgaggcagagagcagaaccccggacacc
aagacctgcccccgcactcccaaacagtccccaaaaactcgctccaagaaccccagcccc
tccaaacctggctcagcgtcgcggcgaggagtcagggtgggggacagcgtgaccccccca
gggaggagtacaggttcaggggtcaaaagagggctggacttggggggtaagagccaatca
tcttcctcctctgccactccgtcttcgccctcatccgcgggtgaagatttcagtctgctc
tgggtggataagtaccgcccccagaatctgaaggctgtgattggtcagcagggagaccag
agccaagccaataagttgcttcgctggctgaagaactggcacacccaccatgcagtggga
ggggctaaaccagcaggcagagggtttggtaagttcaccagcagtaaggataacgggtca
agcttcaaggcggctctgctgtctggacctcctggcgtgggcaagaccaccacagctgcc
ttggtctgtgaggagctgggctacagctatgtagagatgaatgccagctgtacccgcagt
aagaacagtctgaaacaggtgatcgctgagtctctgaacaacaccagtatcaacaacttc
tacacaggttcgtctcagacagtcagtagtaaacatgttctcatcatggatgagatcgat
ggcatggcaggcaacgaagaccggggaggaatccaggagatgataggtctgattaaacag
tcccggatccccatcatctgtatgtgtaatgatcgtaatcaccagaagatccgctctctg
gccaactactgctttgacctgcgcttccagagaccacgactggagcagatcaagggagcc
atgatgtccattgctttcaaagagggtctgaaagtcccgcctcctgccctcaacgagatg
atcctggcgtccaatcaggacatccgacaggtactccacaacctgagcatgtggtcggct
aaggacaaggtcatgacctacgaccgggtcaaagaggacgccaacaacgcacgcaaggac
ataaagctgggtccgtttgacgtgtgccggaaggtgttctccaagggggaggagtcagat
cacatgacgttgattgacaagtcggacctgttcttccatgattactccctggcccccctc
ttcgtccaggagaactacgtacatgttaaacctgctgctgctggtggtgatctgaagtcc
cacctggtcctcctcagtaagacagctgattctatctgtgatggagacctggtggacaga
cagatacgttccaaacaggcctggtctctactgcccacacaggcgatctattccagtgtg
ttaccaggagagttgatgcgtggctatatgaactgcttcccctcgtttccctcctggctg
ggaaagttttcctcctccaataaacactctcggatcattcaggagctggcctctcacatg
agcctcaagacattaagtagcagacaggcggtgagcctggactacctcccgtacctccgc
atggccctgttgtgtcctcttcagaggcagggggcggagggggccggtcaggccgtccag
ctgttagatgactatcacctggtccgagaggatgtggacagcctcatggagatcagcctc
tgggggggccagcctgacccctacgctaaactagaccccaaggtgaagtcagcgttcacg
agggcctataaccgggagtcccacctgacaccctactccctccaaccaatcaagaagggc
cgtcgtggcgggggagtggaggcagaactgggaggagaggggcaagaggaacagcctgag
gaagaggaggaggaagaaggtgttgcagctgacgccatgatcaaaaagaaggccaaaccc
tccaaggagcccaagaaggagaagacaacagccggggattctgggaagggaaagggcaaa
ggcaagggcaaagccaggaagtga
DBGET
integrated database retrieval system
