Salvelinus fontinalis (brook trout): 129844839
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Entry
129844839 CDS
T11136
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129844839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129844839
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129844839
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129844839
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129844839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf_CCCH_4
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_12
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
129844839
NCBI-ProteinID:
XP_055768966
LinkDB
All DBs
Position
Unknown
AA seq
277 aa
AA seq
DB search
MQDLIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRAACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICMNYLVGFCPEGRSCKFMHPRFELPMGATEQPP
LPAQILGHQKPLPSLGRSSLSLIQLTNPGGGAGPHQHQHHQRQPYSSGPSMHQHHNNMGG
GNRGPRPLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgatagccaccgtggaccacatcaagtttgatctagagatagctgtggag
cagcagctgggggctcagcctctccccttccccgggatggacaagtccggggctgctgtg
tgtgagttcttcatgagagcagcatgtctcaaaggtggtatgtgtccgttccgtcacatc
agtggggagaagacggtggtgtgtaaacactggctcagaggactctgtaagaagggagac
cagtgtgagtttctacacgagtacgacatgaccaagatgcccgagtgttacttctactcc
aagttcggagagtgcagtaacaaggaatgtccgttcctccacatcgacccagagtctaag
atcaaagactgtccctggtatgacagaggcttctgcaaacatggtccagactgcagacat
cgccacaccagaagagtaatctgtatgaactacttggttgggttttgtccagagggccgg
tcctgtaaattcatgcacccgcggtttgagctgccgatgggagccacggaacagcctcct
ctaccagcacagatactgggtcaccagaagccgttgccttcgcttggccgctcgtccctg
tcactcatccagctgaccaatcctgggggcggggcgggtcctcaccagcatcaacaccat
caacgccagccgtactcctctggtcccagcatgcatcagcaccacaacaacatgggagga
gggaacaggggtcctcgcccactagaccaggtcacctgctacaagtgtggtgagaagggc
cactacgccaacaaatgcaccaaaggacacctggccttcctcagtggacagtaa
DBGET
integrated database retrieval system
