Salvelinus fontinalis (brook trout): 129851069
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Entry
129851069 CDS
T11136
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129851069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129851069
03036 Chromosome and associated proteins [BR:
sfon03036
]
129851069
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
129851069
Coactivators
SAGA/TFTC/STAGA complex
129851069
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
129851069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
129851069
NCBI-ProteinID:
XP_055773230
LinkDB
All DBs
Position
3:50874037..50886251
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AA seq
957 aa
AA seq
DB search
MAAGSDLLDEVFFNAEVDEKVVCDLVGSLESELSGHESPEASSQTVAKHMASSGTGFNAN
VQQNKRGLAQEVAKAGAGVQGGVIISNTRSQGSAMDASSSESDSSAGHRQGKTVAVSASI
ITPLPNHGGKVASSATQTLNGGSLMNCHNSGSAVSLTGTPLSNSCTSSGNASVAVTVVNN
GPGLSKGHASAVMPPSLNTTIFQTSFVNSQNVVTSSHAASLGTGPAISHIVRPSMQTAGS
GTAMNGPNAGLPFDCLNNGQSPTSVAASAGSHIIMAEAPKTIIQNAPCAVTNPSFQSVPR
ASTPVTVAASPGGSRSIAQQVLAPRHPQTSPNQPNVQNIQLPPGMVLVRSESGQLLMIHQ
QTLAQMQSQSQSQGVMAPRPATPTSTPPFQITSVQAPGTPILTRQVTPTTIIKQGSPVPT
SAPVTTTLQKPPVTTTLQRPPVLQSPMIVVGAAAGTSMGTALPGATQRTVTASPGTTVTL
ATETMENVKKCKNFLSTLIKLASSGKQSSETAANVKDLVKDLLEGKIEVEDFTNRLYREL
NSSPQPYLVPFLKRSLPALRQLTPDSAAFIQHSGLQQQASATTPTMVVLDSPALRPVAPT
IRPHLISKQGLTTPMVLQSQQQGAMVRPLQVTPMVTLRGPPPHSHIMMGQPQVQLKQLQT
VPVVKPGVLTGSKLSPGAPSLATVVQKNKLKEAGGTFRSAMDDDDINDVASMAGVNLSEE
SARILATNSELVGAVTRSCKDEAFLHTSTLTRRILEIGKKFGVSDLGPEVVNYVSHASQT
RLQNLLEKVSEVAQQRNINFKEDSRYEQTSDMRAQIKFFEQLDQMEKQRKEEQEREILMK
AAKSRSRQEDPEQLRLKQKAKEMQQQELFQLRQKEANLTALAAIGPRKKRKMEAAAAAAG
AEGSGSSPSASGSGSSGASRQFIRQRITRVNLRDLLFCLENERDTSHSHLLYKGFLK
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaggctccgatttgctagatgaggttttctttaacgctgaggtggacgagaaa
gtagtttgtgatcttgtggggtctcttgagtccgagctttcgggtcacgagagccctgag
gcaagtagccagacagtcgctaaacacatggccagttccgggacagggtttaatgctaat
gtccagcagaacaaacggggacttgctcaagaggttgcaaaagcaggggctggagtgcaa
gggggtgtcattattagtaatacgaggtcccagggttcagctatggatgcctcatcgagt
gagtcggactcatcggcaggacaccgccaaggaaagactgttgctgtcagtgccagtata
ataactcctctcccaaaccacggagggaaagtagcctcttccgcaactcaaactttgaat
ggaggcagtttaatgaactgtcacaattcaggaagcgctgtctctctcactgggacaccg
ctgtcaaatagttgcacgagtagcggcaatgcctcggtagctgtcacagttgtcaacaac
gggccggggttgtcaaaaggacatgcgagcgcagtaatgccaccttcattgaacaccact
atcttccagacatcattcgtgaactctcagaatgttgtcacctcgtctcacgctgcgagt
ctgggcactggacctgccatatcacatattgtgaggccatctatgcaaactgcgggatcg
ggtacagcgatgaatggtcctaatgcgggattgcctttcgattgcctgaacaatggtcag
tcgcccacctctgtggctgccagtgcggggtcgcacatcatcatggcagaggcgcccaaa
acaatcatacagaatgctccttgtgctgtaacgaacccgtcgttccagagcgtaccaagg
gcttccactccggtgacagtggctgcgagcccgggagggagccgttctatcgcgcaacag
gtgttggcgcctcgtcacccccagacatccccgaaccagcccaacgttcagaacatccag
cttcccccaggtatggtcctggtgcgtagtgagagtgggcagctgttgatgatccaccag
cagaccctggctcagatgcagtcccagtcccaatcccagggagtcatggccccccgccca
gccacccccaccagcactcctcctttccagatcacctcagtccaggctcctggaacgccc
atcctcactaggcaggtgactcccaccactatcatcaagcagggctcgcctgtgccaacc
tctgctcctgtcaccaccacactccagaagcctcctgtcaccaccacactccagaggcct
cctgtcctacagagtcccatgattgtggtaggggctgctgcaggcacctctatggggaca
gcgctaccaggggccacccagaggaccgtcaccgcatcacccgggaccactgtcaccttg
gcaacggagacgatggagaatgtgaagaaatgcaagaacttcctgtctacattaatcaag
ctggcgtccagcgggaagcaatcctcagagactgccgccaacgttaaagacctggtcaaa
gatctcctggaagggaagattgaagtggaggacttcaccaacaggttatacagagagctc
aactcctcacctcagccttacctcgtgcctttcctcaagaggagccttcctgccctgcgg
cagctcaccccagactcagcagccttcatccagcacagtggactccagcagcaggcctct
gccaccacccccaccatggtggtactggacagcccagccctgcgccctgtagccccaacc
atcagaccacacctcatcagcaaacaggggctgactaccccaatggtgctccagtctcag
cagcagggggcaatggtaaggcctcttcaggtgacccccatggtgaccctcagaggtccg
cccccccacagtcacatcatgatgggacagccacaggtgcagctcaaacagctacagaca
gtccctgtggtgaagcctggagtgttgactggatctaagttgtctcctggtgctccctct
ctggccactgtagttcagaagaacaagctgaaggaagctgggggcacgttcaggtcagct
atggatgacgatgacatcaatgatgtggcatctatggctggggttaacctgtctgaggag
agtgcccgtatcctggcaaccaactccgagctggtgggagcggtgacacggtcctgtaag
gacgaggccttcctccatacctccacactgaccagaagaatactggaaataggtaagaag
tttggtgtgagtgatctggggccggaggtagtaaactacgtgtcccacgcctcccagacc
aggctgcagaacctgttggagaaagtctctgaggtggcccagcagaggaacatcaacttc
aaggaggacagtcggtacgagcagacgagcgacatgcgtgcccagatcaagttctttgag
cagctggatcagatggagaaacagaggaaagaggagcaggagagagagattctgatgaag
gcagcaaagtctcgttctcgtcaagaagaccctgagcagctgcggttgaaacagaaggcc
aaagagatgcagcagcaggagctgtttcagttgagacagaaggaagctaacctgacggcg
ctggcagccatcggccccaggaagaagaggaaaatggaggctgcagccgctgcagctgga
gctgagggctcagggtccagtccctctgcgtctggtagtggtagttcaggagcatccaga
cagtttatccgccagcgcatcacgcgtgtcaacctcagggacctgctcttctgtttggag
aatgagagagacaccagtcactcccatctcctctacaaaggcttcctcaaatag
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