Salvelinus fontinalis (brook trout): 129851134
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Entry
129851134 CDS
T11136
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129851134
Enzymes [BR:
sfon01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129851134
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
129851134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
Sina_ZnF
zf-TRAF
zf-rbx1
PDZ_Tricorn
TRAF3_RING
RING_XB3-XBAT31
LemA
U-box
zf-RING_6
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
129851134
NCBI-ProteinID:
XP_055773415
LinkDB
All DBs
Position
3:complement(54536764..54668159)
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AA seq
1058 aa
AA seq
DB search
MGFELDRFKGAVDPDLKCNLCNKVLEDPLTTPCGHVFCASCVLPWVVQKSSCPVKCQRIS
TTELNHVLPLKNLILKLDIKCDNHARGCEKVVKLHHLAEHAEMCDYSPAKCRNKGCKEVL
NLKDMDAHMRESCDYRPVGICDSGCGLMLIHKEQKLDTHCCLKAMKAHNSALHGKVVNLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSSRIDSLTRTLVPPSKGG
ETKNVTAILHREGGSLGFNIVGGRPCADDHNGTLNEGIFVSKIVEKGPTDKEGGLQIHDR
LMEVNGKDLSKATHDQAVEVFRTAKEPIMVQVLRRAPRPKPSIPASDTQVVDISTQTDIT
FQHIMALTKLPATAPVVAVLEQYLMPEEHSPGHEYFDPNDFLEGMQQEMDREELEYEEVD
LYRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRTDESTRNDESSEQENLGDDQTT
ASNTLGSRRKLTYSQDTLGSTDLPFSSESFISADYDHADFLGIPADECERFRELLELKCQ
VRSVGAPHGLYCQSARAGRAEEGVDKELELLNEELHSIELECLNIVRAHKMQQLREQYRE
AWMLHNSGFRNYNTSIDARRHELSDINELPEKSDKDSSSAYNTGESCRSTPLTLELSPDN
SLRRGEEIQGEAGAYSSAGLNNRILKPLLSPVQEADGPSRIRPSSSKESEFGLQAEEKEH
KLGESTHKLAQPRSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLVSQGDPV
TPRDMLEPKKEWKVKIRSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDAFSELKI
GRYWSKEERKQHAVRAKEQKQRRQFMKQSRADCLKEQASLDDDKKEPNIIELSHKKMMKK
RNKKIFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcggtttaaaggggctgtggacccagatttgaaatgcaacttg
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgcgcaagc
tgtgtgctgccttgggttgtccagaaaagtagctgccccgtaaaatgtcaaaggatctcc
acgacagagctgaaccacgttctccctctgaaaaacctgattctgaagctggacataaag
tgtgacaaccatgccagaggctgtgaaaaagtggtaaagctgcatcatctagcagagcat
gccgagatgtgcgattactcaccggccaaatgcaggaataaaggatgcaaggaagtgctc
aatctgaaggacatggatgcccatatgcgcgaatcctgtgattacagaccggtcgggata
tgcgacagtggatgtggcttgatgctcatccacaaagagcaaaaactagacacccattgc
tgtttgaaagccatgaaagcacataatagtgcattgcacgggaaggtggtcaacttggac
aaagagttcaagaagcaatcattgaaatcaagcaaaagagagaaatcacttcttgctcaa
ctctccgcggtgcacaatgagctacaaatgacagcgctgaagtatcagaagaaattcact
gaatacagttcaaggatcgattcgctgactaggacccttgttcccccgtccaagggcggg
gagacaaaaaacgtcacagccatccttcatcgggagggaggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccataatggcactttgaatgaaggcatttttgta
tccaagatcgttgagaagggaccaacagacaaggagggaggccttcagatccacgacaga
ttaatggaggtgaatgggaaggacctgtccaaggccacccatgaccaggcagtggaggtc
ttccgcacggccaaggagcccatcatggtccaggtgcttcgccgggccccccgccccaaa
ccctccatccctgcctcagacacccaggtggtagacatcagcacacagacagacatcacc
tttcaacacatcatggccctcaccaagctacctgccaccgcccccgtcgtggctgtgctg
gagcaatacctaatgcctgaggagcattcccctgggcacgagtactttgaccccaatgat
ttcctggagggcatgcagcaggagatggatcgagaggagctggaatatgaggaagtggat
ttgtacagaaccaacatccaggacaagcttgggttgactgtctgctacaggactgacgat
gaggacgagactgggatctatgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccaaatcaatggaattgagatccagaaccga
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtatgcctactggtagcc
agaccagagatccagctggatgagggttggatggatgacgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcagttcaccgccagc
atgctgcagcagaagaagcatgaggaggatggtggaacaacggacacagccaccctgttg
tccaaccaccacgagaaggacagtggggttggccgcaccgacgagagcacgcgcaccgac
gagagcacgcgcaacgacgagagctcggagcaggagaacctgggggatgaccagactaca
gcctccaacacactgggcagccgcaggaagctgacctacagccaggacaccctgggcagc
actgacctgcctttcagtagtgagtccttcatctctgcagactacgaccatgctgacttc
ctgggtatccccgccgatgagtgtgagcgcttccgagagctcctggagttgaagtgccag
gtgaggagcgtgggggccccccatggcctgtactgccagagtgccagggccggaagggcc
gaagagggggtggacaaggagctggagctgctgaacgaggagctgcacagcattgagctt
gagtgcctcaacatcgtccgggcccacaagatgcagcagctaagggagcagtatcgcgag
gcgtggatgctgcacaacagcggcttccgcaactacaacaccagcatcgatgcgcgccgc
cacgagctttccgatattaacgagctgcccgagaagtcagacaaggacagctccagtgcc
tacaacactggagagagctgtcgcagcacccccctcaccctggagctgtccccagacaac
tccctccgaaggggggaagagatccagggcgaggccggggcctacagcagtgcagggctc
aacaacaggatcctcaagcccctgctgtctcctgtccaagaggctgatggccccagcaga
atcaggccgtcgtcctctaaggagtctgagtttggcctgcaggcagaggagaaggaacat
aagctgggagagtctactcacaagctggcccagccccgctccccgtacaaacatgcccac
atcccggcccatgcccagcactaccagagctacatgcagctgatccagcagaagtctgcc
gtggagtacgcccagagccaaatgagcctggtcagtctggtcagccaaggtgaccctgtg
acccccagagacatgctggagcccaagaaggagtggaaggtgaagatccgcagtgatggc
acacgctacatcaccaagaggcccatcagggacaagctactgaaggagcgcgccttgcgt
atccgcgaggagcgcagcggcatgaccacagacgacgacgccttcagcgagctgaagatc
gggcggtactggagcaaagaggagaggaagcagcacgcggtgcgcgccaaggaacagaag
cagcgccgccagttcatgaagcagagccgcgctgactgcctgaaggaacaggccagcctg
gatgacgacaagaaggagcccaatatcattgagctgagccacaaaaagatgatgaaaaag
aggaacaagaaaatctttgacaattggatgactatccaagaacttttaacccacggtgct
aagtcgcctgacggcacgcgagtgtacaactccctcctgtctgtcaccacagtgtag
DBGET
integrated database retrieval system
