Salvelinus fontinalis (brook trout): 129851298
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Entry
129851298 CDS
T11136
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
129851298 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129851298 (slx4)
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129851298 (slx4)
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
129851298 (slx4)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
129851298 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2
zf-C2H2_4
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
129851298
NCBI-ProteinID:
XP_055773715
LinkDB
All DBs
Position
3:complement(62398516..62410733)
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AA seq
1948 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRRKAGVTEKRSVAEPSSQDTAKDIPTKRVTTRRKKKDVGPS
SKEALGNNSEHVSSISTTCDEPNRLPSNTDKSKQAVVNGGIELGVGENGSSVAVDVAGSQ
PEDRGIGVKEKVLHRMQQFKRVNPQKLVHGERNPPAATGSESDSAAPHPLPDNEVPSSSA
STPLPLDPHVDDSDEALALRLQEELDREAQAVAQGSAVDLEQGGLFFCQLCQKDLSAMSP
TGRTQHINRCLDESEDSAAPAPPPAPSVPECPICGKRFKSQKSRAAHLKRCSSTMGVAPA
VLLQAVQRQVAEGLTDSTANQPPQAGGSKRKGSTDPSLPGRKKPRKKPRGLDEDTMVAMA
LSHSLLEQEKEMEREMQRELQREMEREGGQQLPALLPHISLSPLKWRAEPSKTSKGRGKR
KKGAPPRPPPLLLVQDSETALRRLQERVAGLLLRTRAPSPPTPTRCPSSLPSCSTGAGPL
WQKSALRDGGPKVISEFYTPELRAFIQPWVSLKTDMVCPTKAMPVSSTNLSITEGISMTK
QPIPSSQQPVSSTQAAPSSLPSTPGTGHLPVGSQTLCDLMELADEGMTLTQWGYSTPGPA
RDKENTATDFHLSGCVPESTDEPPDLCLSGFIPESIRNTESHQLRSVPQSRDTNRSNQKS
VALSRLASDLTSMVNNPQFSDVQLQVDSGEVYFTHSFMLYARCPLLAQMVHDSGFGVQED
CMPSAQRVLLGEVPGQAVYTLLQYLYTAHCPLTRTLLPHVQELAARFNLEELQQLCQLYP
AQTDIHRGVEGQGDQWGDYPDQEHQSGGEEEHQDQVFMELLHSMWNEEEVEEDEDSGEEG
GIAMEEGRGDGVTIEDGETNEERVNEEEMEEIYEFAATQRKRDEGKESEKEESEGEEEGG
VTFFTETEEEQEAPIQYHSLAEHSDKGELTCMTSPQTKPPSLEADIAIGDIDTDRGNPNR
IKTDLNKSEGRDPECSRTATMESDRTKQFESNVTSSRSVGEVSTTKSLHDDQELNASLDR
SYSRLFSDSWGVYETQEEPHTSPPTQPSCHSQPPRAIQKPFCSQPPRTMVVGQPELTSPP
SSRSQPTRLRVDGGTRQTAIPTLQYSAIEIIDLSISPPLVPGVAALPVPGLSPGEVTDTG
ARVRTEGVVGGGKVPVCKELLQEKVPSSPDDLKRESHGPYSISLPVSPPHSTKEEPELIV
LSDSSEEMEVGDLAPTSPSPPPPPRLSQNHQGYTPITTQSTTESKKSSSKEKETIGGSVR
VPSVSPSDQDLDPDPPSYKPGSNAGSTSLVDCSAEMSWFIPATPPLPSRRTSSSSTQTFS
SMHRTQLFPKANSSSSSSAASVFSSPTLPFRPSRQTSNPHRVSTHSAQTESSISRQKSDS
RGLRDDRSSQKYNSGSVGSDRAARSPVPSKSQPKRSCFPRLTPSLSVIPPPDPSTKGTPL
HNIPQPYSSTPLYSDLPKPSAPSLAFPLLSDGEGDNGTRQRGRGLGISGSPWKRGGLASL
GLREESDEMMKMEELERSVVKEEEQEEEMGEDMERSSNSFQRSFLGMDEPPMAFDDSWGL
NAGGGDTDGERSQAVCFSLRLESSGGGASPPRQGRRDGEIAGPSSTFTPSPLPKAYTTHS
YSTPSPPPPNTTTPQANPEINANVLDAEIWDDWGEEEDEALPLSQRVNPVALAQRVAQLK
TPVAPRRKGQQGPLVPITPMPSYSDMDTPDLKNKLNRFGVRPLPKRQMILKLKEIHQYTH
QVVSSESEDEAPSLGRPRAVGPPPTTSSMEPTRKPVSCAQTGGFKEPSGRAAPTISLVKL
PGGEDMEPLSASQGSNTSSTAPSEDSERSNPEQCLSDHSDNEDITASQSASKLQDNLVAV
RRFIQSDPDLYRQILLYQPLVLSDFQDRLKAAGIRLGGTKLLDYLDSQCITFTTAKPRLR
GGRKRKVKGATRAGGRGRRGRGAAKTAD
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgatcaagacttcgtggacctctgctctaagttgctcaaacgagtccgc
agaaaagcaggcgtaaccgagaagagaagtgttgcagagccctcgtcccaggacactgcg
aaagacatacccaccaaaagggtgacgactaggaggaagaagaaagatgttggcccaagt
tcaaaggaagctttgggtaacaactctgaacacgtttcctccatctctaccacttgtgat
gaaccaaaccgacttccctccaatacagacaaatctaaacaagcagtggtcaatggaggt
attgaacttggtgtaggagagaatgggtcatcagtggctgtggatgttgctgggtctcaa
cctgaggataggggaattggggtgaaggagaaagtgctacacaggatgcagcagttcaag
agagtcaatccacagaagctggtgcatggtgagaggaatccgcctgcagcaacagggagt
gaaagtgacagtgctgctccccatccactgccagataatgaagttccatcctcctccgcg
tccactcccctaccactggacccccatgtggatgactcggatgaggccctggccctgcgt
ctacaggaggagctggacagggaggcccaggctgtggcccagggtagtgcagtggacctg
gagcagggaggcctgttcttctgtcagctctgccagaaagacctgtctgccatgagcccc
acaggacgcacccaacacatcaacaggtgtctagacgagagtgaggacagtgctgccccc
gcccctcctcccgctcccagcgtcccggaatgccccatctgtggtaaacggttcaagtcc
cagaagagtcgcgcggcccacctgaagcgttgctcctccacgatgggcgtggctcctgcc
gtgctgctgcaggctgtacagagacaagttgctgagggcctgactgacagcaccgccaac
caacctccgcaggccggaggttccaagcgtaaaggctccacagaccccagcctcccgggc
aggaagaagcccagaaagaagccccgtggcctggacgaagacaccatggtggccatggcc
ctgtcccactccctcctggagcaggagaaagagatggagcgggagatgcagagagagtta
cagagggagatggagagagaaggtggtcagcagctcccagccctcctccctcacatttct
ctgtcaccattgaagtggagagctgaaccaagtaagacgagtaaggggcgtggcaagagg
aaaaagggtgcaccccctcgcccccctcccctcctcctggtccaggactcggagacagcc
ctgaggcgactacaggagcgcgtggctggcctcctcctccgtacccgtgccccctcgccg
cccacccccacacgctgccccagctccctgccctcctgcagcactggtgctggtcccctc
tggcagaagagtgcgttgcgggatggagggccgaaggtcatctctgagttctacacccca
gagctcagagcgtttatacagccttgggtgtctctaaagacggatatggtctgtcctacc
aaggccatgcctgtatcctccaccaacctttccataacagaaggcatctctatgaccaag
caacctatcccctcctcccaacaaccagtctcctccacccaggcagccccctcttcgctc
ccttccaccccagggacagggcaccttccagtgggcagccagactctgtgtgacctgatg
gagctggctgatgagggaatgaccctcacacagtggggctattctaccccaggacctgcc
agagacaaagagaacactgctacagacttccacctaagtggctgtgttcctgagagcaca
gacgaaccccctgacctgtgtctcagtggcttcatcccagagagcattagaaacactgaa
agccatcaactgagatctgttcctcaaagcagagataccaacaggagcaaccagaaatca
gtggcactgtccagactggcctcagacctgaccagtatggtgaacaacccccagttcagt
gatgtccagctacaggtggacagtggggaggtgtacttcacccattcattcatgctgtat
gctcgatgccccctgctggcgcagatggtccatgacagtggattcggggtgcaggaggac
tgcatgccctcagcccagagggtgttgttgggtgaggtaccaggccaggcagtgtatacc
ctgctccagtacctctacacagcccactgtcccctcacacgcaccctgctgccacacgtt
caggagctagcagccaggttcaacctggaggagctgcagcagctgtgccagctctaccca
gctcagacagacatccacagaggtgtagagggacagggggatcagtggggagactaccca
gaccaggagcaccaatctgggggagaggaggagcaccaagaccaggtcttcatggagctc
ctccactccatgtggaatgaagaagaggttgaggaagatgaggacagtggagaggaagga
gggattgcaatggaggaggggcgaggggatggcgtgacgatagaagacggagagacaaat
gaagaaagggtgaacgaagaagagatggaggagatatatgagtttgctgccactcagaga
aagagggatgaagggaaagagagcgaaaaggaagaatcagaaggagaggaggagggagga
gtgacatttttcacagagacagaagaagagcaggaggctccaatccaatatcactcattg
gctgaacactcagataagggtgaattaacatgcatgacatcccctcaaacaaaacctccc
agtttagaggcagacatagctattggtgacattgacacagaccgggggaatccaaatagg
ataaaaactgatctcaacaaatcagaaggtagagatccagaatgttctagaacagccacc
atggagtcagacagaactaaacaatttgaatcaaacgtcacaagctcaagaagtgttgga
gaggtatcaacgacaaaaagcctccatgacgatcaagaactaaatgctagtctggaccgt
agctacagccgcctcttctctgactcttggggggtctatgagacgcaggaggagccccac
acctccccaccaacacaaccatcctgccactcccaaccccccagggctatccagaaaccc
ttctgctcccagccccccaggaccatggtagtgggacagccggaactcacctccccacca
tcctcccgctcccagcccacaaggctgagggtcgatgggggtacgagacagacagcgatc
cctaccctccagtactcagccattgaaatcattgacctctccatcagtcctcctctggtc
cctggtgtagccgcactacctgtccctggtttgtccccaggggaagtgactgacaccggg
gcacgagttaggacggagggagtggtgggaggagggaaagttcctgtgtgtaaggagtta
ctccaagagaaggtaccgtctagtccagatgacttaaagagagagagtcatggtccgtat
agtatttctctacccgtctctcctcctcacagtaccaaagaagaacctgagcttatagtt
ctgtctgactctagtgaagagatggaggtaggggatctagcacctaccagcccctctcca
ccgccccctcctcgtctctcccagaaccaccaaggctacaccccaatcacaactcaatcc
accacagaatccaagaaatccagctcgaaggagaaagagactattggtggttctgtgagg
gttccttctgtctcaccttcagatcaagacctagatccagatcctcctagttataaacca
ggttctaatgctggttctactagtctcgtggactgttctgcagagatgtcttggttcatc
ccggccactccgcccctgccgtccaggaggaccagctctagctctacccagacctttagt
agcatgcatcgcactcagctctttcctaaggccaactcttcttcctcctcttctgcagcg
tcagttttctcctctcccaccctccctttcaggcctagccgccagacctccaacccacac
agggtttctacacattctgcccagacagagtcctctatttctaggcagaaatcagacagc
agagggcttcgtgacgaccgctcttcccagaaatacaacagtggttcagtcggatctgac
cgtgctgcccgctccccagtcccctccaaatcccaaccaaaacgctcctgctttccccgc
ctgaccccctctctctccgtcatccccccaccagacccctccaccaagggtacccctctc
cacaacatcccccagccatacagctccactcccctttattcagatctacccaagccctct
gctccgtctctggccttccctcttctgagcgacggggagggggacaacggaaccaggcag
agagggagggggctggggatctctgggagcccatggaagagagggggactggcttctctg
ggcctgagagaggaatcggatgagatgatgaaaatggaggaactggaaaggagtgtagtg
aaagaagaagagcaggaggaagagatgggagaagacatggagaggtccagtaacagcttt
caacggagcttcctcgggatggacgagccgcccatggccttcgatgactcctggggccta
aacgcaggaggaggggacacggacggagaacgatcccaggcagtgtgcttcagtctgagg
ctagagagcagcggcggtggggctagtcctccaagacagggccggagagatggagagatt
gcaggaccatcctctacttttaccccctctcctcttcctaaagcctacaccacccactct
tactccaccccctctccacctccacccaacaccactacaccccaggccaacccagagatc
aacgctaacgtcctggacgctgagatctgggacgactggggggaggaagaggatgaggct
cttcctctctctcagagggtgaatcctgtggctctggctcagagagtggcccagctcaag
actccagtggccccccgtaggaaaggccagcagggccccctggtccccatcacccccatg
cccagctactctgacatggacacacctgacctcaagaacaagctcaaccgattcggtgtg
cgtcccttacccaagcgccagatgatcctgaagctcaaggagatccaccagtacacccac
caggtcgtcagctcagagtccgaggacgaggcaccttccctgggtcgccccagagctgtc
gggcccccacccaccacctcctccatggagcccaccagaaagccagtgtcctgtgcccag
actggggggtttaaagagcctagtggaagagcagcacctaccatctccctggtgaaactg
cctggtggggaggacatggagcctctctctgcctctcagggatccaatacgtcctccaca
gcacccagtgaagactctgagaggtctaatccagagcagtgcctatctgaccactcggat
aacgaagacattactgcctcgcagtctgcctccaagctccaggacaaccttgtcgctgtc
cgtcgtttcatccagtcagaccctgacctctacaggcagattctcctctaccagcccctg
gtcctgtcagactttcaggacagactcaaggccgcaggtatccggctggggggcaccaag
ctactagactacctggattcgcagtgcattacgtttaccacagccaagcctcgactgaga
ggaggaagaaagagaaaagtgaagggggcgaccagggctggagggaggggaaggagaggg
agaggggcagctaaaacagcagattga
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