Salvelinus fontinalis (brook trout): 129852920
Help
Entry
129852920 CDS
T11136
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sfon04040
]
129852920
04091 Lectins [BR:
sfon04091
]
129852920
Ion channels [BR:
sfon04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
129852920
Lectins [BR:
sfon04091
]
C-Type lectins
Others
129852920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Ion_trans
Lectin_C
GPS
Motif
Other DBs
NCBI-GeneID:
129852920
NCBI-ProteinID:
XP_055774493
LinkDB
All DBs
Position
4:complement(68373912..68399650)
Genome browser
AA seq
2548 aa
AA seq
DB search
MDSTNLSVLLLNAFLLSLSCAEDEIAPLSCPEYQEGFDGSCYEFVGLPRSRSFLSAQGWC
ERGGGHLAFILNDETQQFLQKHLQPEQDWWLGLAPASPNLTLDSAAAEGPLSWLDGSDVS
YSNWVNDPDPGAGCGHILRSSGFQWEATSNCSQELHFICQFESGRSIACADHNATLQCGS
GQVIEIDDSFYGRKTVHYCRTSPASSATSTQEECTWIDVVDSVTGDCHGLQACQATADVA
SFGEPCPGLGSYLSVEYSCKDGLHLLMSKLAAVFDNVSITVKWLLHPFQGNLTCTLSAGD
GHNIDPYSPEELESSVVHKYTRPGVFIVGVECTTSEWHVTAQKAITIQEPIGEFGVIKCY
SVNQSTDGENCKALYGSPLQIQVEVEAGTNVTYKIHCGEMLVANSSAVRGIVPHNITVGP
EVEQELGSGCHQLTLHASNGVSVLGVSTELQVCLLEAVEGLLGSVMAEEGECPDSDLYVS
VSLDRGAPVQLLFQVSGANDSISETRDMQNRSMQVYNISTTIQGALQVKVRAWNVFSHMD
VDVGNTAAVCHNNSDFQTEEHKRLPRDNVKITSDPESPSDFTQSVTLGLTGLSGVPGISE
PGIQLEWECKEQCKCRDKTNQETHVIAAVCLPDPFLFYIYSFTVQKKNGAGAQVAKAEKC
ITVTPPEFTDVTISCSNCNPVNINNDVTLKLECTTARSCPTVVWHVEDTRPLTGDLKHCY
KKAKQRPLLHRIDGGTEYMVTSDNLKNAQSRSLNLNVIAYGKTTSGVVKYTIQIPGVATP
APVATNILPATTLPAATTILPAVTTRPAATTIPVATIPLVATTLLAATTIAATTTVSVTV
PEITAPTTITNLHSCIISPQSGTVLDAFNITCATTSCSTGKCQYCFKTDKDKHLRCSYGN
EVKSIFLPLGNKSYNYSLSVVVTLTNGDRKTTATITTEVWPANSSSSVENLQSVVDNTVA
QLQQQGLLTGETLGQMFKSVSDILNKGSSEDQKGAREELREQMLSTMTAVLKNVPNNTPQ
EVQLTARAVAGITKRREEVNSAAQLEASSLVADLSSSLLYMNVREHGGEEMVQAATPIVE
AASNILGVSSNASTQRKVSKILLNSMDNVQSALLNGKKVGQEPAIIKSPEISVYANRISP
NSIQMQSINIPDSSSASFSFPHLGADVLSPEEPVDVRMLSFEKNPYSWSEGGNISGAMGS
VTLTRQDGSAIPVENLSEEIEILLPRLEGGQVNSTILDLGNYSTLMIDVPSPDITLVLKM
EPSEDIPFVLLLGYKDYPKDKQYLAKTQMPHQGNSQERYTWVLGPNDLTGKVGVHYLVVR
PIVEAGVKSVNATVTVTSIAAQCKYWNETLSTWSEDGCRVGPLTTSLVTQCLCNHLTFFG
SSFFVMPNLVDVSRTAELFATFSDNPVVVCFVGAIFIAYLLVVVWARRKDIQDIAKVKVT
LLEDNDPLAEYRYMLNISTGHRRGASTSSQVTVTLLGMEGESEPHHLTDPDKPVFERGAV
DTFLLTTPFSLGELQSIRLWHDNSGGHPAWYINKVTVQDLETGQKWHFLCHSWLAIDMGQ
CILDKVFPVASDTDLKKFSNLFFMKTAKDFRDGHIWFSVISRPPTSTFTCVQRVSCCFSL
LLCTMLTSIMFWGIPTDPSEQTMDLGHIEFTWQQVMIGVQSSIIMFPINLLIVSIFRNTR
PRETKPGKPKAEVSKQGKTGRVTPSQPPSPQRERELTPDTVIKDIKKIAQSLSKAMKSPI
PRLELEMKPGQQTDINTLLSLVEDIIRQQNRAGGEFYTDASKKEGSLILSLGVANLQESS
LCGSPEKTGDGRQKRSTNSQYLYRQLRHVEKELSLLGPSRFPNPDSYCRAVQQVQGMRGL
LESHLSSSSLGGDQLSQSPSPAESNEGDSSSKKQGGLPWWFVFIGWILVLATSGVSGYFT
MMYGLTYGKDRSISWLISMVVSFFESLFITQPLKVLGFAAFFALVLKKVDQEEYGDAKFE
GELRNPDDPDAVRAVRRDSTCSFYQPPPPTDIERMRSNKIKEQKVFALIKEILTYMGFMW
MLLLVAYGQRDPNAYFLTQHIRQSFSQGISDSMSHKDVFTWANNSLLSNLFGEYPGFITD
GNSKLVGNARLRQVRVQKNSCRIARSMRQAVPDCHAPYSWEVEDMGSYGPGWDRSVSENT
SKTLRSPWQYQTQARLRAQPIWGSVVLYRGGGFVVDLGPELQNASSTLQYLFDNTWLDMF
TRAVFVEFTVYNANVNLFCTVTLMLETTAVGAFQFRSELQSVRLYQSTGGLHIFVMASEV
IYFLFILYYMYVQGKLMKQQKWAYFKTKWNLLELAIILLSWSALSVFIKRTLLGNRDMEY
YHKHKDQFASFHETATADAVLGYLIAFLVLLATVKLWHLLRLNPKLHMITATLQRAWTDI
SGFLVVITIMFLAYSIASYLMYGWKLYSYRTLLDAALTMVSLQLGIFNYDEVLDYNPVLG
AFLIGSCIIFMTFVVLNLFISVILVAFTQEQIHHKPSEEEEIVDLMLMKLCSLFGIKMKK
EEKEDGDXPKADGMTASATNKGFSTISS
NT seq
7647 nt
NT seq
+upstream
nt +downstream
nt
atggacagcactaatctctctgtgttgctcttgaatgctttcctcttaagcctgtcttgt
gctgaggatgagatagcacctctatcctgcccagagtaccaagagggctttgatggctcc
tgttatgagtttgtgggtctacctcgttcgcgttccttcctcagtgcacagggttggtgt
gagcgaggtggtggacacctggccttcattttaaatgacgaaacccagcagttcctacag
aagcacctgcagccggagcaggactggtggctgggtctggcacctgcctccccaaaccta
acactggactctgctgctgctgagggtcctctctcctggcttgatggctctgatgtcagc
tactctaactgggtgaacgaccctgatccaggggctggctgtggtcacatactgaggagc
tcagggtttcaatgggaggcaacaagcaactgtagccaggagctgcacttcatctgccaa
tttgaatctgggcgctccattgcttgtgctgaccacaatgcaacactacagtgtggttct
ggtcaggtgatagagattgatgacagcttctatggtcgtaagacggttcactactgccgg
acgagtcccgcttcttcagccacctccacacaggaggagtgtacctggatagatgttgta
gattcagtgacaggagactgccatgggctgcaggcatgccaggccacggcagatgtggcc
tcttttggtgaaccatgcccagggcttggaagctacctgtctgtggaatacagctgcaaa
gatggtctccacttattaatgagcaagttggctgccgtctttgacaatgtctccataaca
gtgaagtggcttctccatcccttccagggcaacctgacctgcactctaagtgctggagat
gggcacaacatcgatccttatagtccagaagagttggagagcagtgtggttcataaatac
actcgtccgggtgtcttcatagttggggtggagtgtaccaccagtgagtggcatgtgaca
gctcagaaagccatcaccattcaggagcctatcggggagtttggtgtcattaagtgctat
agcgtgaaccaatcaacagatggagaaaactgcaaggccctgtatggcagtccccttcaa
atccaggttgaagtagaagctggtacgaatgtgacctacaaaatccactgtggtgagatg
ttggtggccaattcatcagcagtcagaggaatcgtcccccacaacatcacagtgggacca
gaggtggagcaagagctgggatctggctgccaccagctgaccctgcatgcctctaacggg
gtctcggtcttgggcgtgtccactgagctgcaggtgtgtctgctggaggctgtggagggc
ctgctgggatcagtgatggctgaggagggagagtgtccagactcagacctctacgttagt
gtctccctggaccggggggccccggtgcagcttctcttccaagtgtctggagccaacgac
agcatctccgagaccagagacatgcaaaacagaagcatgcaggtttacaatatctcaacc
actatccaaggagctttgcaagtgaaagtcagggcctggaatgtcttttcacacatggac
gtggatgtggggaacacagcagcagtttgtcacaataattcagactttcagacagaagag
cataaaaggcttccccgggataatgtgaaaatcacttccgatccagaaagtccatctgac
ttcactcaaagtgtcacacttgggttaactggcttgagtggagtacccggaatcagtgaa
cctgggatacaacttgaatgggaatgcaaggaacaatgtaaatgcagagacaaaacaaac
caggagactcatgtgattgcagcagtctgccttccagacccatttcttttttatatatac
agttttactgtgcagaagaaaaatggggccggggctcaagtggctaaagcagagaaatgc
atcactgttactccgccagaattcaccgatgttaccataagttgttctaactgtaaccca
gtgaacataaacaacgatgtaaccctcaaattggagtgtaccaccgcaaggagttgccca
acagtagtttggcatgttgaggacacgagacctttgacaggagacctcaaacactgctac
aaaaaagcaaagcaaagaccactgctacacagaatagatggtggcactgaatacatggtg
acaagtgacaatctgaaaaatgcacagtccagatctctgaatctcaatgtgatagcgtat
ggtaagacgacatctggcgttgtcaagtacaccattcagataccaggtgttgcaacacct
gcacctgttgccactaacatactgcctgctactaccttaccggctgctaccaccatccta
ccggctgttactactcgtccagctgctactaccataccagttgctaccatcccactggta
gccactaccctactggctgctaccaccatagcggcaactactactgtatctgtaactgtg
cctgaaataacagccccaactaccatcaccaacctccattcctgcataatttcccctcag
tcaggcacagttctagatgctttcaatatcacctgtgcaacaacctcctgctccacaggc
aaatgccaatattgtttcaaaactgacaaagataaacatttgcgctgcagttatggaaat
gaagtaaagtcaatcttcctacctctcgggaacaaaagttacaactacagtctgtctgtg
gtggttactctaacaaatggggacagaaaaaccactgccacaatcaccactgaggtgtgg
ccagccaactccagttcctcagtggagaatctgcagtctgtggttgacaacactgttgct
cagctacagcagcaggggttgctcactggggagaccctaggacagatgttcaagtctgtg
tccgacattctgaacaagggctccagtgaggatcagaaaggtgccagggaggagctgcga
gaacagatgctgagcaccatgactgcagtgctgaagaatgtccccaacaacactcctcag
gaagtgcagctgacggccagagcagtggcagggatcaccaagaggagggaagaggtcaat
tctgctgctcagctagaagctagctccctggtggcagacctcagctcttccctcctctat
atgaatgtccgtgagcatggtggagaagagatggtgcaggcagctacaccaattgtagag
gcagccagcaatatcctgggagtctcttcaaatgcaagcacacagagaaaggtctcaaag
attctcctgaacagtatggacaatgtgcagagtgcactgttaaatggcaaaaaggttggt
caggagcctgccattatcaagagccctgagatcagtgtgtatgctaacaggatatctcca
aatagcattcagatgcagtctataaacatcccagatagctcctctgcaagcttttccttc
cctcacctgggtgctgatgtcctttctccagaggaaccagtggatgtgcgaatgctgagt
tttgagaagaacccttattcttggagtgaggggggtaacatcagtggtgccatggggtct
gtgacactcaccagacaggatggatcagccatccctgtggagaacctgtctgaggaaatt
gagatcctcttgccgagacttgaaggcgggcaggtaaacagcacaatccttgacctggga
aactacagcacactgatgattgacgtcccttcaccagacataacactggtgctaaagatg
gagccctcagaggacataccatttgtactgttgctggggtataaagactacccaaaggac
aagcaatatctagccaagacacagatgcctcaccaaggcaattcacaagagagatacacc
tgggtcctgggtcccaatgatttgacaggaaaagttggggtgcattaccttgtggtgagg
cccattgtagaagcaggggttaaatccgtcaatgccactgtgactgtcacctccattgct
gcccagtgcaagtattggaatgaaaccttatccacctggagtgaagatggctgcagggtt
ggtcctttaaccacgtcattggtcactcagtgcttatgtaaccacttgaccttcttcggg
agctctttcttcgtcatgcccaaccttgtggatgtgtcccgtaccgctgagctctttgcc
accttctcagacaaccctgtggtggtgtgctttgttggtgccatcttcattgcttatctc
ttggtggtcgtgtgggcacgcaggaaggacatccaggacatagccaaggtgaaggtgaca
ttgttggaagataatgaccccttggctgaataccgttacatgctgaatatcagcactggg
catcggcgtggtgcttccacctcctctcaggttactgtgactctgctgggcatggaggga
gagagtgagccacaccacctcactgaccctgacaagcctgtttttgagaggggtgcagtg
gatacattcctgttgaccacacccttctctctgggggagctgcagagcatcaggctgtgg
cacgacaactcaggggggcaccctgcctggtatataaacaaagtgacggtgcaggatcta
gaaactggacagaagtggcacttcctgtgtcactcatggctggccatagatatgggccag
tgcatccttgataaggtattccctgttgcctctgacacggatttgaagaaattcagtaat
ctgttcttcatgaaaacggcaaaggatttccgtgatggccacatctggttttctgtgatc
agccggcctccaacgagcaccttcacatgtgtccagcgagtctcctgctgtttctctctg
ctgctctgcaccatgctgaccagcatcatgttctggggcatccctaccgacccctctgag
cagaccatggacctgggtcatatcgagttcacctggcagcaggtgatgattggagttcag
agttcaatcataatgtttccaattaatctcctcattgtgagtatcttcagaaacacccgc
ccccgagagacgaagcctggaaagcccaaggcagaggtgtccaagcaggggaagactggc
agagtgactccctcacagcccccctccccacagagggagagagaactcacaccagacact
gtcatcaaggacataaagaagattgctcagtcactctccaaggctatgaagagccccatt
ccacgcctggagttagagatgaagcctggacaacaaactgatatcaacaccctgctctct
ctggtggaggacatcatccggcagcagaaccgagccggtggagagttctacactgatgct
tccaagaaagagggatcgctcattctctcactaggggtagccaatctgcaagagagcagc
ctgtgtgggagccctgagaagactggggatgggagacagaaaaggagcacaaacagccag
tatctgtacaggcagctacgccatgtagagaaggagctgagcctactgggaccttctcgc
tttcccaacccagacagctactgccgggcagtgcagcaggtccaaggcatgagggggctg
ctagagtcccacctctcctcttccagcctgggaggggaccagctgtctcaaagccccagc
ccagcagagagcaatgagggagacagcagcagtaagaagcagggcgggctgccctggtgg
tttgtgtttattggctggattctggtgttagccaccagcggagtatcaggatacttcacc
atgatgtatgggctgacctatgggaaggaccgctctataagctggctcatctccatggtc
gtgtctttctttgagagcctctttatcactcagccgctgaaggtgctaggttttgcagcc
ttctttgctcttgttctgaagaaagttgatcaggaggagtatggggatgcaaagtttgag
ggggagctccgaaacccagatgaccctgatgcggtgcgggctgtccggagggatagcaca
tgcagcttctaccagccccctcctccaacagacatcgagaggatgaggagcaacaagatc
aaggagcagaaggtctttgccctcatcaaagagattctcacctacatggggttcatgtgg
atgttactcctggtggcgtatggccagcgggaccctaatgcttacttcctgactcagcac
attcggcagagtttcagccaagggatctcagacagcatgagtcacaaagatgtgttcacc
tgggcaaataactctcttctcagcaacctctttggagagtacccaggtttcatcacagat
gggaactccaaactggttggtaatgcccgtcttcgccaagtgagggtgcagaagaactcc
tgccgcatcgcccgctccatgcgccaggctgtacctgactgccatgctccatactcatgg
gaggtggaggacatgggctcctatgggccaggctgggaccgctctgtgagcgaaaacacc
tcaaagaccctccgcagtccctggcagtaccaaacccaggccagactcagagcccaaccc
atctggggcagtgtggtcctctacaggggaggggggtttgtggtggacctgggcccggag
ttgcagaatgctagcagtacccttcagtatctgtttgacaacacctggcttgatatgttc
acccgagcagtttttgtagagttcacagtgtacaatgccaatgtcaacctcttctgcact
gtcacactcatgctggagaccacagctgtaggagcgttccagtttcgcagtgagctgcag
agtgtccgactataccagtccaccggtggactccatatctttgtcatggcctctgaggtc
atctatttcctctttatcctctactatatgtatgttcagggaaagctgatgaagcagcag
aagtgggcttacttcaagacaaagtggaacctgctggagctcgccatcatcctcctgagc
tggagcgcgctgtctgtcttcattaagaggaccctgttagggaaccgggatatggagtac
taccacaagcataaagaccagtttgccagtttccatgagacagccacagcagatgcagtg
ctggggtatctgatcgcattcctggtgctactggctacagtcaaactgtggcatctgctg
aggctcaaccccaagctacacatgatcacagccacattgcaacgggcctggactgacata
tcaggcttcctcgtggtcattaccattatgttcctggcctattctatcgcttcttatcta
atgtatggctggaagctgtattcatataggactctcctggatgctgctctgaccatggtc
agcttgcaactgggcatcttcaactatgacgaggttcttgattacaacccggtgcttggt
gcgttcctcatcggctcctgcattatattcatgacctttgtggttctgaacctgttcatc
tccgtcatcctggtggcgttcactcaagagcaaatacatcacaagccctcagaggaggag
gagatagtggatctgatgctgatgaagctctgcagcttgtttggaatcaaaatgaagaag
gaggagaaagaagatggtgacntacccaaggcggatggcatgactgcctcggcaactaac
aaaggattctccactatatcctcatag
DBGET
integrated database retrieval system
