Salvelinus fontinalis (brook trout): 129853079 Help Entry 129853079         CDS       T11136                                  Name (RefSeq) dmX-like protein 1 isoform X1   KO K24155   rabconnectin-3a Organism sfon  Salvelinus fontinalis (brook trout) Pathway sfon04142   Lysosome biogenesis Brite KEGG Orthology (KO) [BR:sfon00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome biogenesis     129853079  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sfon04131]     129853079 Membrane trafficking [BR:sfon04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     129853079  Endosome - Lysosome transport   Acidification regulators    Rabconnectin-3 complex     129853079    RAVE complex     129853079 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Rav1p_C Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR5 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_IFT122_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WDR55 Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd EIF3I WD40_Gbeta Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_EML ASA1 Beta-prop_DCAF4 Beta-prop_SPT8 PEP5_VPS11_N Beta-prop_DCAF12 NBCH_WD40 Beta-prop_Vps41 Beta-prop_VPS8 Motif Other DBs NCBI-GeneID:  129853079 NCBI-ProteinID:  XP_055774730 LinkDB All DBs Position 4:11507584..11573018 Genome browser AA seq 3031 aa AA seqDB search MNLHQVLTGAVNPGDNCFSVGSINNQPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV GCVDSSLQGGQVAASYGSIVCVFEPVQLMNQKDRTSAELSYQWQKSGQFVLQSIVRNLAW DPTGTRLLTGSASLQLWSNISDGFDEEGEQTDITIGDPRCPWRCIWHCKTATPIQLMKFS PDGEFFATAGQDDCLVKVWYGTSKWQSGVTKLFTPPEHNAQGELDFSFVYLAHPRSVTGF SWRKTSKYMPRGSVCNVLLTCCKDSVCRLWAETLLPSDSLLSGHTLSHVNNNGQSSDSLK SSGSKKTPSRIKTQDRNPLELNLQESWRAPLRGVAQPSLTGCLPTQQNSHHNHKTNSVPH ANALCHFHIAASINPATDIPLLPSITSLCGGDDEEPGGPFTVHWLNNKELLLTLAMEVFL QQLRGSVEQNHSEHSQEEPDYEEVEEASRRAAERGPDVASTHLPAAAVEHQVEVLLEDWN RGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLSRSVV MYACNKNVDLAIQHGRQRPTGLPHSSSLLIPYGQSKATSYSSSLRLSIFTPNVLMISTHS DGSLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTP DVDSVPAPSTTLSQPLGGGPSRVSLGAVSQDPNAIYSELILWRVDPVGPLSFSGGVSELA RINSLHSSAFSNVAWLPTLIPSNCLGVYCNSPSACFVASDGHTLRLYQAVIEAKKLLSEL SNPDISKYVGKVFNIISQQSTAKPGCIIELDAITDFQGKETQLLHVFEEDLILGSERRDA TQEAPATETASSQPGFSARFFLVVVEFTQTGRSFLHMWHLQLAAGQITMDETGAPPEKEN VTLSPMNSSFSFETFNSPSAQKNKPCTSNLQSASRLTLATHRLYSQELALPDGIEVISVT PSAGHLSASSLQPAGGAPYLLATSCSDGKVRFWRCRVAAVEPDTKELTYTWEEWPLLVEE GLGNSSAVTVSGRPVTVSCCHTSRIAVAYRHNPSPHLSPNHLSPNPQQGVREPLVHVGLF QCESTGGSHWVLEQTLVLDASTPTGNNNNNMESVVKGLNVENNNLDIYLPNDDCQGTSGK SLVHLDWVSREDGSHILTVGIGSKLYMYGLLSGKPPELGLSEGPREQSSSRLVLLRSVDL VSSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPAPAKSTASNTTTTDMGSVSSL LAAMKQSHEEGLNPAPPKKSLTRSMTSLAQKLSGKRTVYDLPAEMEDYGLFEAAHHLFPT LPQYHPVQLLELMDLGKVRRAKAILSHLVKCIAGEIVALKDNGTNQDKRFRSRTISAGGS TSRDPKLFSKGESSDYTEIDSIPPLPLYALLAADEDCSPKPKDKVSSLSGDSGHGSSQTD AYDELFQSSGVGVDDLEHMDSDQEDGGAKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPG LTRMEQMSLMALADTIATTSTDIRESQSRGKGGETLDECGLKFLLAVRLHTFLLTTLPPA HRAQLLRQGLSTCHYAWAFHSEAEDELLHMLPALQKGDPTWPELRAMGMGWWLRSTNKLR RCIEKVAKASFQRQNDPLDAAIFYLAMKKKAVVWGLYRSQKNAKMTTFFSNNFGEERWRR AALKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETSS TYKRILQRHVLGQDRQLPAHQDPFLRSTAYWVLEDYSRALDTLLEQPAAPNLASSTQAGH TTQPGSTSSTSICSPEVFNFYTYLRTHPLLLRRHFGSSEKTRVGLTAEGRMANSISLVER RLFFTAAYAHLQAGCPMLALEVLSKMPKVVKRSKLHQDDTTNPDLSETKKEQASDLDWSQ PALNGFESVPDSLSNSQSDSVLSFDWGQPSVSVQDEALELKWDSDKEEEEDDDPQGLAMK SADNTSSVFQDAISPLTETLLDEGDVLMPSEDILAAQLKFSACLKILTTELRTLSTGYEL DGGKLRYQLCQWLEREVVALQRCCSYKPCLPELALGMAGPSGEEEAQAQPGEAQRTRRHW LQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESQQDDSVQSAVAPYLHHASIPL LLACTASAKTVVANPIVHLTNLTHDILHTINALDSPPHPDIVNNEIYVMHTLAASLSACI YQCLCDGHDHSHVNQFTGIVYQSILSFQHHPVRTVSMEETVLPNTHPAQWPGISTLIRLL NSAGEESQPGLAVLLCEILTAVFLSLFVHGLATHSSNELFRIVAHPLNSKLWVAVFGGGA RTPITEKPSQAKSPPAASEEFDRKPRRFKLLSSSTRSASREGPETPSPTSPVVEQETSIF KEHFVPPELSIWDYFIAKCFLLPQPFLPPSESRVEYDSEESQGSQDEDDDDDEDEFGDFD PNSPSREHSNPNSYSWCLMRLAMVQLVLGNLKSFYPMAGHDLLDLPVGSPLCHAVLKTLQ RWEQVLLKRLEIFGGPPSKYISTHPLDETAASGPAILRHKALFEPSNTPFRSSHHSALPV KRLWQYLVKQEEVQETFIRNIFTKKRDQNESVEDHNENDKCSGMEEPSCNQSEADLGYPG GKARIIHKDSDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDTEAEAK GDDFLVIQARDDFNTLHGTTPYTHSSLGTPINMPWLGGLQTGRGAAVLIKRNINNVRRMT SHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGAL RLWQTNTTGNTPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVNPVN SLVHAFSCHESGATVLSLAPRQQLLITGGRKGWISVLELPHRHQRQSFQAHDSPVKALAV DPTEDSFISGSAEGNIKVWSLSTQYLLHQFPNEHARQSLFRNLGTGVMQIEVGPANHIFS CGADGTMKMRILPDRFSVNNGNLKNDVKFII NT seq 9096 nt NT seq  +upstreamnt  +downstreamnt atgaatcttcaccaagtccttactggggctgtcaacccaggggacaattgtttttctgta ggtagcataaacaaccaaccattcacggcatatgcctctggctgtgacgttgtgattttg ggcagtgactttgaaaggctacagatcatcccaggagcgaagcatgggaacatccaggtg ggctgtgtggacagctcactacagggaggccaggttgcagcttcctatggaagtattgtc tgtgtctttgagccggttcagctcatgaaccagaaggacaggacatcagcagaactgagc taccagtggcagaagagtggacagtttgttttgcagtccatagtgcgtaacctggcctgg gaccccacaggcactcgtctcttaactgggtccgctagcctccagctgtggtccaatatc agcgatggttttgatgaggaaggggaacagacagacatcaccattggtgaccctcggtgt ccctggaggtgtatctggcactgcaaaaccgccaccccaattcagctcatgaagttctct ccagatggagaattctttgctactgccggacaggacgactgtctggtcaaagtttggtac ggcaccagcaaatggcagtctggcgtgaccaagctgttcaccccaccggagcacaacgct cagggcgagctcgacttctcttttgtctacctggcacacccacgctctgtaacaggcttc tcctggaggaagaccagcaagtacatgccacggggttcagtgtgcaatgttctactgaca tgctgtaaggacagtgtgtgtcgcctgtgggccgagaccctgcttcccagtgacagcttg ctgtccggacacacgctcagtcacgttaataataacggacagagcagcgactcactgaaa tcgtcaggcagcaagaagactccctctcgtatcaaaacacaggacaggaatcccctggag ttgaatctgcaggagtcgtggagagcccccttgagaggtgtggcccagccctccctgacc ggctgccttccgacccagcagaacagtcaccacaaccacaagaccaacagcgtgccccat gccaacgctctctgccacttccacatcgctgccagcatcaaccctgccacagatatcccc ctgctgccctctatcacgtcgctgtgtgggggagatgacgaggagcctggcgggcccttc accgtgcactggctcaacaacaaggagctgcttctcaccctggccatggaggtgttcctg cagcagctcagaggcagtgtggagcagaaccactcggaacactcccaggaggagcctgac tatgaggaggtagaggaggcttctaggcgagcggccgagcgaggacccgacgtggcgtcc acccacctgcctgctgcagcggtggagcaccaggtagaggtgctactggaggactggaac aggggggcagacatgctgttcagtatccaccccatggatggctctctgctggtgtggcac gtggactggctggatgaataccagcctggcatgttccggcaggtccaggtgtcctttgtg tcccggattcctgtggccttccccacgggcgacgccaactccctgagccgcagcgtggtc atgtacgcctgtaacaagaacgtggacctagccatccaacatggccgccagcggcctacc ggcctaccacattcctcgtcgttgctgattccctacggccagagcaaggcgacctcctac tccagcagcctgcgcctcagcatcttcacccccaacgtgctcatgatctccacgcactcc gatggctccctcaaccagtgggcggtcagcttcgcagaggagtcggccttctccactgtg ctcagcgtgtcccacaagtcacgctactgcggccaccgcttccacctcaacgacctggcc tgccactccctgctgcccctgttgctcaccacctcacaccacaatgccctgcgcaccccc gatgtggacagtgtccccgccccctcaaccaccctttctcaacccctcgggggcgggccc agccgggtgtccctgggcgctgtgtcgcaggatcccaatgccatctacagcgagctcatt ctgtggagggtggatccagtgggaccgctgtccttctctggaggggtgtctgagctggcc aggatcaactctctccactcctccgccttctccaatgtggcctggctgcccacactcatc cccagtaactgccttggtgtctactgcaactctcccagtgcctgcttcgtggccagtgac ggtcacacgctgaggctttaccaggctgttattgaagccaagaaactactcagtgagctc tccaacccagatatttcaaaatatgtcggcaaagtttttaacatcatcagccagcaatcg actgctaaaccaggttgtatcatcgagctagatgccattactgacttccaggggaaggag actcagctgctgcatgtgtttgaagaggatctgattctgggcagtgagaggagagatgcc actcaggaagctcccgctacagagactgcctccagccagccaggcttctccgcccgcttc ttcctggtggtggtagagtttacccagactggcaggtctttcctgcatatgtggcacctg caactggcagctggccaaatcactatggacgagacgggtgctccgcctgaaaaggagaat gtgaccttgtcgccaatgaacagctcctttagctttgagacgttcaactccccctcggcc cagaagaacaagccttgcacgtccaacctgcagagtgccagtcgcctcaccctggccact cacaggttgtacagccaggagctagctcttccagacggcattgaggtgatcagtgtcacg ccctcagcaggtcatctgagcgcgtcctccctgcagccggcaggtggcgctccctatctc ctggccacttcctgttcagacgggaaggtgaggttctggaggtgcagggtggctgcagtg gagccagacaccaaggagctgacgtacacctgggaggaatggcctctattggtggaggag gggctgggcaacagcagtgccgtgaccgtgtcaggcagaccagtcacggtcagctgttgt cacaccagccgcattgcagtggcctaccgacacaaccctagccctcacctgagccctaac cacctgagccctaaccctcagcagggtgtcagggaaccactggtccatgtagggttattc cagtgtgagtccacaggtggctcccactgggtgctagagcagaccctcgtcctggatgct tccactcccactggtaacaacaacaataacatggagagtgtcgtcaagggcctgaatgtg gagaataataacctggacatctatctgcccaatgacgactgccaggggacgtctggtaag agtctggtccacctggactgggtctccagggaggacggctcccacattcttactgtgggg attggttccaaactctacatgtacggcctgctctctggcaaacctcctgaactgggcctg tctgagggccccagggagcagagctcttcccgcctggtcctcctgcgctccgtggacctg gtctcctccgtggaaggctccctgcccatccccgtctccctgtcttgggtgagagacggc atcctggtggtgggcatggactgtgagatgcacgtgtactcccagtggcagcccccggcc ccggccaagtccacggcctcgaataccaccaccacagacatgggcagcgtgtcatccctc ctggctgcaatgaaacagagccatgaggagggcctgaaccctgctcctcccaagaagagc ttgaccaggtccatgaccagcctggcccagaagctgagtgggaagaggacggtgtacgac ctgcctgcggagatggaggactacgggctgtttgaggcggcacaccacctgttccccaca ctgccccagtaccacccggtacagctgctggagctcatggacctggggaaggttcggcgt gccaaggccatcctctcccacctcgtcaaatgcattgccggggagattgtggccctcaaa gacaacggcaccaaccaagacaagcgtttccgctcgcgcaccatcagcgccggcggcagc acctccagagaccccaagctcttcagcaagggcgagagctcggactacacagagattgac tccatccctcccctgcccctgtacgcgctgctggcggccgacgaggactgctcccccaag cccaaggacaaggtgtccagcttgagtggagacagtggccacgggtccagtcagacggac gcctacgatgagctcttccagagcagcggggtgggtgtggacgacctggagcatatggac agcgaccaggaggatggcggtgctaaggtcatagacctgtctcaatatagccccaccttc tttgggccagagcacgcccaggttctgtccagccacctgctccactccagcctgccgggc ctgacccgcatggaacagatgtccctcatggccctggctgacaccatcgccaccacaagc actgacatccgggagagccagagcaggggtaaaggtggagagactttggatgagtgtggt ctgaagttcctgttggctgtgaggctccatacgttcctgctgactaccctgcctcctgcc catcgcgcccagctccttcgccaaggtctgtccacctgtcactacgcctgggctttccac tccgaggctgaggacgagctgctccacatgttacctgccttgcagaaaggagaccccacc tggcccgagctccgcgccatgggcatgggctggtggctcaggagcaccaataaactccgg aggtgtattgaaaaggtcgcaaaagcgtcttttcaaaggcagaacgatcctctggatgcc gccatcttctatctcgctatgaaaaagaaagcggtggtctggggactgtacaggtctcag aagaatgccaaaatgactacgttcttcagcaacaactttggtgaggaaaggtggaggagg gctgccttgaagaacgccttctctctgctggggaagcagcgcttccagcactcagcagcc ttctttcttttggcaggctccctcaaggacgctgtagaggtttgcctggagaagatgcag gacctgcagctggccctggtgatctcccggctctatgagtccgagtttgagacgtcctcc acctacaaacgcatcctgcagaggcacgtgctgggccaagaccgccagctccccgcccac caggaccccttcctgcgcagcacggcctactgggtactagaggactacagccgggccctg gatactctgctggagcagcctgctgccccaaacctagcgtcctccactcaggctggccac acaactcaaccaggtagtacctcgtccacgtccatctgtagcccggaggtcttcaacttc tacacctacctccgcacacatcccttactgctgcgccgccattttggctcgtctgagaag accagggtgggtctgacagcggagggtcgcatggcaaactcaatcagcctggtggagagg aggctgttcttcaccgcagcctacgctcacctgcaggccggctgccccatgctggccctg gaggtcctctccaaaatgcccaaagtcgtcaaaagatccaagctccaccaggacgatacc actaaccccgacctgagtgagacaaaaaaggaacaggcatcagatttggactggtctcag cccgcgttgaacggcttcgagtctgtgccagacagcttgtccaatagccaatcggactct gtgctgagtttcgactggggtcagccctctgtgtcggttcaggatgaagccctggagttg aaatgggacagcgacaaggaggaggaagaggacgacgacccacagggcttggccatgaag agtgccgacaacaccagtagcgtctttcaagacgccatctctccattgacggagacgctg ctggacgagggtgacgtcctcatgccctctgaggacatcctggccgctcaactcaaattc agcgcctgcctgaagatcctgaccacggagctgcggaccctgtccacgggttacgagctg gacggggggaagctacgctaccagctgtgccagtggctggagagggaggtggtggccctg cagaggtgctgcagctacaagccctgcctgccagagctggccctgggaatggcagggcca agtggagaggaggaggcccaggcccagcctggtgaggcccagcgcacccgcagacactgg ctccagagcaaccagcctctcttgcgcatgttcctcagctactgcagcttgcacggctcc cacggaggaggcctggcctcggtgcgcatggaactcatcctgctgcttcaggagtcccaa caggatgacagtgtccagtcagccgtcgccccctacctgcaccacgcctccattcctctc ctgctggcctgcactgccagtgccaagacagtggtggccaaccccatcgtccatctgacc aacctcacccacgacatcctgcacaccatcaacgcactggactccccgccacacccagac atcgtcaacaacgagatctatgtgatgcacacactggcagcctcgctgtccgcctgcata taccagtgtctctgcgatggccacgaccacagccatgtgaaccagttcactgggatagtg taccagagtatcctctccttccagcaccacccggtacgcactgtgagcatggaggagact gtactgcccaacacccacccagcacagtggccaggtatcagtaccctgatccgcctgttg aactctgctggtgaggagagccagccaggcctggccgtgttactgtgtgagatcctgacg gccgtcttcctcagcctgtttgtgcacggcctggccacccactccagcaacgagctgttc cgcatcgtggcccaccctctcaacagcaagctgtgggtggctgtgttcggagggggggcg cgtacccccatcacagagaagcccagtcaggccaagtcacctccagcagccagtgaggag ttcgataggaagcccaggcgcttcaagctgctgtcgtcgtcgacacgcagtgcctccaga gaggggccagagacccccagcccaaccagccctgtggtggagcaagagacctccatcttc aaagagcactttgtccccccggagctcagcatctgggactactttatcgcaaagtgtttt ctcctcccacagcctttcctccctccgtcagagagcagggtggagtacgactcggaggag agccagggcagtcaggacgaggatgatgatgatgatgaagacgagtttggagactttgac cccaactctcctagccgagaacattccaatcccaactcctacagttggtgtctgatgcgc ctggccatggtccagctggtcctaggcaacctgaagtcattctaccccatggcaggacat gacctactagatctacctgtgggctctcctctgtgtcacgcggtgctgaagaccctccag cgctgggagcaggtgttgctgaagaggctggaaattttcggggggccgccctccaagtac atctccacacaccctctggacgagacggctgcctcgggccccgccatcctcagacacaaa gccctgtttgagccctccaacacacctttcaggtccagtcaccactctgccctgcctgtg aagaggctgtggcagtacctggtcaaacaggaagaggtgcaggaaacattcatccgcaat attttcaccaagaagcgagaccaaaacgagtcggttgaggaccacaatgaaaatgacaaa tgttcagggatggaggagcctagctgtaaccagagcgaggcagatctgggctaccccgga ggcaaggcccggatcatccacaaggattcggacatcattaccgccttcgccattaacaag gctaatcggaactgcttagtcatggcctccactcatgacatccaggagctggacgtgtcc tccatcttggccactcagattctgacgtggatcgacgacgataccgaggccgaggccaaa ggtgatgactttctggtgatccaggcccgggatgacttcaacaccctccacggcaccacc ccctacacccacagcagcctagggacgcccatcaacatgccctggctcgggggcctgcag acggggagaggcgctgccgtgctcatcaaaaggaacatcaacaacgtgagaaggatgacc tcccacccaaccttgccttactacttaacaggagcgcaggacggaagtgtccggatgttt gagtggggccactctcagcagatcatctgcttccgaagtccaggcaattccagagtcaca cggatacgattcaaccaccaaggaaacaagtttggtatcgttgacgctgacggagcccta cgtctatggcagaccaatacgactgggaacacccctaaaccctacctgacattgcagtgc cataataagacggctcacgactttgtgttcgtgggctcatcctccctcatagccacagca gggctgtcaacagacaacaggaatgtgtgtctttgggatacattggtgaatccagtgaac agtctagtgcacgcctttagttgtcatgagtcgggggccacggtgctgtcgctggccccc aggcagcagctgctgataacaggtggcaggaagggctggatcagcgtgctggagctcccc cacaggcaccagcgccagagcttccaggcccacgactcccccgtcaaggcgctggctgtg gaccccaccgaggacagcttcatcagcggctctgccgagggcaacatcaaggtgtggagc ctgtccacgcagtacttactgcatcagttccccaacgagcacgctcgccagtccctgttc cggaatctgggcacgggcgtgatgcagatcgaggtgggcccggccaaccacatcttttcg tgtggggccgacggtaccatgaagatgaggattctccctgaccgcttcagcgtcaacaat ggcaacctgaagaacgacgtcaagttcataatttag

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