Salvelinus fontinalis (brook trout): 129853208
Help
Entry
129853208 CDS
T11136
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129853208
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
129853208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
129853208
NCBI-ProteinID:
XP_055774965
LinkDB
All DBs
Position
1:32813773..32879238
Genome browser
AA seq
1857 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCAEDPEDSYSDRLSFYRFDISRLLKHGASLLGSA
GAEFEVEDDKSGEVDPKERLTRQRKLLQRKLGLDIGAAIGMDTMELFNDEDLDTQYISTP
IGPKGQGGKGSGPCSSSHNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSKDM
DPNERSNDSFDGEPEEKRRKTTNVVIDQPAMEHKVLIDTVPDNSSLLDETQEWPLESFCE
ELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVECTAEQMARQHQEWLEDVVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMNDSGVAMTVDILLKLLTEDQWEVRHG
GLLGIKYALAVRKDLISAMLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGFVQLLPNK
VPFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFLRH
TISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKVWT
ELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKARCKEKAGGKPRQGALV
QVKETVQEYIAGAETVTEDPITRDYVVTRARLMAAKLLGALCRCMCDPQVNSSSQDIRPA
ESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSALVQPRLLGILSEQLYYDEI
AIPFTRMQNECKQLISLLADAQIDVRDRLNCNVFTIDQASELVTTIFTESTVGLNMKSKQ
FQPLDGKRQQTQSTVDETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSSACPVSTTQET
AKAGMSEKECMHHVVNKTKGIITLYRHQRAAFAITSKRGPTPKTPKTPTTELPPGSTITT
DTDENKKNSLVQRRGAEFSLMTVARHFGQELTGSLPYLWESMVGPLRAVVEDNEGIDWKL
QMERGDAAAQDLVNSLQVLEVTAGAMATELKPLLLEHLPHLFTCLQHPYTAVRHMAARCV
GVLSKIATMETMHLFLERVLPWLGCIEDSTKQEGAIEAMACVMEQLDVDIVPYIVLLVVP
VLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFLEQLLDG
RKLENYKIPVPIQAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHY
LRAQEYAKTKAADRTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERARLQ
HQVKKHNLVVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVI
LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME
ALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVGVEDTIST
ASTQEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQ
HSPKLSALKQLLLDCGLGSSGSAEGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKPQLPTV
TYLRLDGSVQASLRHAIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR
DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANAVISQENASLQSMGTD
QLLNLFTLDKDGKDDKGESSSGGKASIKNVLDGLGDLWDQQQYDTEYNLDSFMHTLH
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttcaaggcttgatcgtctttttatcctgcttgacactggaactactccggtg
acgaggaaggctgctgctcaacagctgggagatgtggtcaaactccacccacatgagctc
aacaacctgttgtcgaaggttttgacatacctgagaagtccaaattgggacacgcgtatc
gctgcgggtcaagcagtggaggccattgtgaagaatatcccagagtggaacccatcgccc
aagcccaaagaagagtcatgtgcggaggacccggaggactcctactctgaccgtttgagt
ttctaccgttttgacatctcccgcctcctcaaacatggtgcttctctactgggttctgcc
ggcgctgagtttgaggtcgaggatgacaagtctggtgaagtggaccctaaggagcgtctc
acccgccagaggaagctgctgcagaggaagctgggactggacataggtgccgcaatcggt
atggacacgatggagctgttcaatgatgaggacctggacacccagtacatctccacgccc
attggccctaagggacagggagggaagggctctggaccctgctccagctcccacaaccac
gtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatgagcaaccga
cagaagaacaaggctaagaggatggccaagctagtggccaagcagcgatccaaagacatg
gatcccaacgagagaagtaatgacagttttgatggggagcccgaggagaagcgcaggaaa
actaccaacgtagtcatcgatcaaccggcaatggagcataaagtcttaatcgatactgtt
ccagacaactctagcctcttagacgagacccaggagtggcccctggagagcttctgtgaa
gagctctgtaacgacctcttcaacccctcatgggagattcgtcacggtgcaggcacaggc
ctcagggagatcctcaagtctcaaggtgctggaggtgggaagctggtggaatgcactgca
gaacagatggcgcggcagcaccaggagtggctggaggacgtggttatcaggctgctctgt
gtctttgctctggaccgttttggagactttgtctctgatgaggtggtggctccggtcaga
gagacttgtgcccagacactgggcgtggccttgcgccacatgaatgacagcggcgttgcc
atgactgtagacatcttgctgaagctgctgacggaggaccagtgggaggtccggcacgga
ggtcttctgggcatcaagtatgccctggctgtccgaaaggacctgatctccgctatgctt
ccgcgggtgctccctgccatcacagaggggctgcaggacctggatgatgacgtcagagcg
gtggcagccgcggccctcatccccgtggtggacggctttgtacagctactccccaacaag
gtcccgttcatagtgaacaccctgtgggatgctctcctggagctggatgacctgacggcc
tccaccaacagcatcatgaccctactgtcctcgctgctcacctacccccaggttcgacag
tgcagcatgcagcagtccctaacggtccttgtccctcgggtctggccattccttagacac
accatatcatcagtcagacgagccgcattagagaccctctttaccttactatccaaagct
gaccagagctgcgcgctatggctcaaccaggtcctgcaagacatgctccgacacatcttc
cagtcttgcatcctggagagcaatcaggagatcctggacctcattcaaaaggtgtggaca
gagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccctggatgggc
gcctggctctgcctgatgatgcaagcctctcacatccccatagacatcaacatgctgctg
gaagtcaaggctcgctgcaaggagaaggccggaggtaagcctcgccagggagccttggtt
caggtgaaggagactgttcaggagtatatcgctggggcggaaactgtgaccgaggaccca
attacgcgggactatgtggtgacacgggctcgcctcatggctgcaaaactgttgggggcc
ttgtgtcggtgtatgtgcgacccgcaggtcaactcatcctcacaggacatccgaccggct
gagtcgctgggccagctgctcctcttccacctcaactctaagtctgccctgcagcgcatc
gcggtggccctggtcctctgtgagtgggctgctgtgcagaaggagtgtcaggtggtgtca
gccttggtccagcctcgcctcttaggcatcctgtcagagcagctgtactacgacgagatc
gccattcccttcacacgcatgcagaacgagtgtaagcagctcatctccctgctggccgac
gctcagatcgacgtgcgcgaccgcctcaactgcaatgttttcaccatcgaccaggccagc
gaactggtgaccaccatcttcaccgagtccaccgtgggtctgaacatgaagtccaaacag
tttcagccactggatggcaagcgtcagcagacccagtccacggtggacgagaccagtgtg
gagtggcagcagctgcacctgcgagtccacatgttcaccgcctgcgccgtggtcaacttg
caggcgctgccagacaagctgaacccggtggtgcgtcctctgatggaggcggctaagcgg
gaggagaataccctggtgcagggctatgccgcctccttcattgcgaagctgctgcagcag
tgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgttcatcggtc
tgcgtggaccccctgctcacgccctcctcggcctgtccggtgtccacgactcaggagact
gctaaagctggaatgtcggaaaaagaatgcatgcaccacgtggtcaataagaccaagggc
atcatcaccctgtaccgccaccagagggcagcatttgccatcaccagcaaaaggggcccc
acccccaaaacccccaagacacccaccactgaactgccccccggcagcaccatcaccaca
gacaccgatgagaataaaaaaaacagtctcgtccagagaagaggcgccgagttctctctg
atgacggttgccaggcactttggccaggagctgacagggtcactgccctacctgtgggag
tccatggtgggacctctgagggctgtggtggaggacaatgaaggcatagattggaagctc
cagatggagaggggggatgctgcggcccaggatctggtcaactcactgcaggtcctagag
gtcactgctggggccatggccaccgagctcaaacctctgttgttggagcacctgccccac
ctgttcacctgtctgcagcatccgtacacggccgttcgtcacatggcggcgcgctgcgtg
ggcgtgctcagcaagatcgctaccatggagaccatgcacctgttcctggagcgtgtgctt
ccatggctagggtgcatcgaggacagcactaagcaggagggggccatcgaggccatggcc
tgtgtgatggagcagttggatgtggacatcgtgccatacattgtgctgctggtggtgccg
gtgctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttc
gccaccctcatccgcttgctacccctggaggctggtatcccggaccctcccaccatgtcg
gatgatctgattcgccagaaggccagagagcgtcactttctggagcagctgcttgacggc
aggaagctggagaactacaagatccctgtgcccatccaggccgagctccgcaagtatcag
caggacggcgtgaactggctgtccttcctgaacaagtacaagctccacggtattctctgt
gatgacatgggcctgggcaagaccctgcagtccatctgcatcctggctggggaccactac
ctcagggcacaggagtatgccaaaaccaaggcggcagaccgcacccccctgccctctctg
gtggtgtgcccccccaccttgacaggtcactgggtggacgaggtgggcaagttctgcacc
aaagagtacctgaacccactgcactacacgggaccccctacagagcgagcacgtttacag
catcaagtgaaaaagcacaacctggtagtagcctcttatgatgttgtacggaacgacatt
gacttttttaggaatgtaaaattcaattattgtatcctcgacgagggccatgtgatcaag
aacggaaagaccaagctctcaaaagccataaagcagttggccgccaacttccgagttatc
ctatcaggaactcccatccagaataatgttctggagctgtggtcactctttgacttcctc
atgcccggcttcctgggcacagaacgacagtttgctgcccgctacggcaaacccatcctg
gccagccgtgatgccaagagctcatcgcgtgagcaggaggccggggtgctggccatggag
gcgctgcatcgccaagttctgcccttcctcttgaggaggatgaaaaaggacgtgctgcag
gacctgccccccaagatcatccaggactactactgtaacctcagccctctacaggttcag
ctgtatgaggactttgccaagtcccgggccaaggttggtgtggaggacaccatctctaca
gcctccacccaggaggaggagaaacccaagctgaaggccacgggccatgtgttccaggct
ctgcagtacttgaggaagctgtgtaaccacccaggcctggtactgctgccacagcaccct
gagtacaagcgcatcacagaccagctggcagcacaacactctagccttcgagacatccag
cattcgcctaaactctcagccctcaaacagttgttgttggactgtggtctgggcagcagc
ggctcagcggagggcacagaggcggtggttgcccaacacagagtgttgatcttctgtcag
ctgaaaagcatgctggacatcgtggagcacgacctgctcaagccgcagctgcccaccgtc
acctacctgcgacttgacggcagcgtgcaggcgagcctgcgccacgccatcgtctccagg
ttcaacaatgacccctccattgacgtgctgctgctcaccacgcacgtgggcggtctgggt
ctgaacctgactggtgctgacacggtggtgtttgtggaacacgactggaaccccatgaga
gacctacaggccatggaccgcgcccacaggataggacagaaacgcgtggtgaatgtgtat
cgtctgatcactcggggcactctggaagagaagatcatgggcctgcagaagttcaagatg
aacatcgccaacgcggtcatcagccaggagaacgccagcctgcagagtatgggcaccgac
cagctcctcaacctcttcaccctggacaaggatgggaaggatgataagggcgagtcgtct
tccggagggaaagcctccattaagaacgtgctggacggtctgggggacctgtgggatcag
cagcagtatgacacagagtacaacctggacagcttcatgcacacgctccactag
DBGET
integrated database retrieval system
