Salvelinus fontinalis (brook trout): 129853511
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Entry
129853511 CDS
T11136
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129853511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129853511
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129853511
Spliceosome [BR:
sfon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129853511
Complex C
U5 SnRNP specific factors
129853511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Cache_WalK
Motif
Other DBs
NCBI-GeneID:
129853511
NCBI-ProteinID:
XP_055775611
LinkDB
All DBs
Position
4:31058153..31074917
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMLEERRAKRRKRDEDRHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMETDPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMTPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVTIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGIIVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCMDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGV
HNYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagcttgcagtatgagtacaaagcgaactccaacttggtc
ttgcaagcagaccgttcgctcattgaccgcacaaggcgtgatgagcccacaggagaggtg
ctgtccctggtggggaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgctggaggagagacgggcaaagaggagaaagagagatgaggacagacatgac
atgaacaagatgaagggcttcaccctcctgtcagagggcattgatgagatggtgggcatc
gtgtacaagcctaagaccaaggagaccagggagacctatgaggtccttctcagcttcatc
caggctgcgcttggagatcagccgagagatatcctgtgtggagcggctgacgaggtgctg
gctgtgctgaagaatgacaagatgagggacaaggagagacggcgtgaagtggagcagtta
cttgggcctgcagatgacacacgctaccacgtgttggtcaacctgggcaagaagatcagt
gactacgggggcgacaaagagctccagaacatggatgacaacattgacgaaacatacgga
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgacggctcagatgaagagagtgaaggagaggaagcagacttgggctgcactctg
acagccaaccttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacatcgatgccttctggctccaacgtcagctcagccgtttctatgacgatgccata
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgaccga
gaatgtgagaaccagctggtcttactgttgggattcaacacctttgacttcatcaaaatc
cttcgtcagcatcgtcgcatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagatcataggaaagatggagacagatccagacttgtccaaagttctt
tatcagctgcaggagactgagaaggaggatattattagggaagagcgatctcgcagggag
agagtaaggaagtctcgtgtggacaatgacttggagtctatggacatcgaccatggagag
tcaatgacccctaaacagttgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctgcccgatggctcctttcgcaagcagcgcaaaggc
tacgaggaggtgcacgtccctgcactcaaacccaagcccttcgctgatgatgaggtgctg
gtgaccattgagaagctgcccaagtatgcccaggcaggtttcgaagggttcaaaacccta
aaccgcattcagagcaagctgttcaagactgctatggagaccgatgagaacctgctggtg
tgtgctcctacgggagcaggtaagaccaacgtggccctcatggctatgctaagagagatc
ggcaagcacatcaacctggacggaaccatcaacttggacgacttcaagattatctatgtg
gctcctatgcgctcactggtacaggagatggtgggaagctttagtaagcgtctggccagt
tatggcatcatagtgtctgagctgacaggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacatcatcacacgcaaaggaggc
gagcgcacctacacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gatgaccgtgggccagtcctggagtctctggtggccaggaccatccgcaacgttgagctg
acacaggaggacgtgcgtctgctgggtctcagtgccaccctgcccaactacgaggacgtg
gccacctgcctgcgggtagaccccgccaagggactcttctactttgacaacagtttccgt
ccagtgcccctggaacagacatatgtgggcatcactgagaagaaggctatcaagcgcttc
cagatcatgaatgaaattgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagacggggaagacggcccgggctatcagggacatg
tgtctggagaaagacaccctggggctgttcctgagggaggggtcagcctcaactgaggtc
ctcaggactgaggcagagcagtgcaagaaccttgagctgaaggacttgctgccctacggt
ttcgccatccatcatgctggtatgaccagagtggaccgtaccttggtggaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgcacatactgtcatcatcaaaggcacccaggtgtacagcccagaaaaaggcagatgg
acagagctgggagccctggacattctacagatgcttggtcgagcggggcgtcctcagtac
gacaccaagggagagggcattctgatcacatcccatggggagctgcagtactacctatct
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagacatgctc
aacgctgagatagtgctgggcaacgtgcagaatgctaaggacgcagtgaactggctgggc
tacacctacctgtacgtgcgcatgctccgtaaccccaccctgtacggagtctcccatgac
gaccgcagctcggaccccctgctggagcgccgcaggatggacctgatccacacggcagcc
aatgtgctggataagaacagcctggtcaagtacgacaagcggaccggcgctttccaggtg
acggatctgggtcgcatcgccagccacttctacatcacccatgactccatccagacgtac
aaccagctgctgaagcccaccctcagtgagatcgagcttttccgtgtcttctccctctcc
tctgagttcaggaacatcactgtcagagaggaagagaagctggaactgcaaaagctgctg
gagagagttcccattccagtgaaggagagcattgaggagcccagcgccaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggttttgctctgatggctgacatg
gtctatgtgacgcagagtgctggaagactgatgcgagccatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaagaccatgaacctttgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgaaaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgagttgatccgcatgcccaagatggggaagaccatccataagtacgtgcaccagttc
cccaaactggaccttgccgttcacctgcagcccatcacccgctccacactgaaggtggag
ctcaccatcacaccagacttccagtgggatgacaaggtgcatggctcgtcagaggccttc
tggatcctggtggaggatgtagacagtgaggtcatcctacaccatgagtacttcctgctt
aaggccaagtacgcccaggacgagcacctggtcaccttcttcgtgcccgtgttcgagccc
ctgcccccacagtacttcatccgcgttgcctcggaccgctggctgtcctgtgagacccag
ctgccggtgtctttccgccacctgatcctgccagagaagtaccccccccctactgagctg
ctggacttgcagcctctgcctgtgaccgccctgcgtaatgccgccttcgagaccctctac
cagaacaagtttcccttcttcaaccccatccagacacaggtgttcaacgctgtgtataac
agtgatgacaacgtgtttgtgggagcccccaccggcagtgggaagaccatctgtgctgag
tttgccatcctgaggatgctgctgcacaacgcagagggacgttgtgtctacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagaagttccaagatgctctg
aataagaaggtggtgttgctgacgggagagactagcactgacctgaagctcctggggaag
ggtgacatcattgtcagcaccccggacaaatgggacatcctgtcgcgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaacgggcctgtgttggaggtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaacgccaaagacgtggcc
cactggctgggatgcagcaccaccgcaaccttcaacttccaccccaacgtcaggcctgtt
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcttgctgtcc
atggccaagccagtgtaccacgctatcatgaagcactccccctctaaaccggctgtggtg
ttcgtcccgtcccgccgacagacccgcctcaccgccatcgacatcctcaccttctgtgct
gctgatgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctgaaggagacgctggccaatggggtgggctacctgcac
gagggcctgtccactacagaacgcaggatcgtggagcagctcttcaactcgggtgcagtc
caggttgtagtggcctcacgctccctctgctggggcacaaacatatctgctcacctggtt
gttatcatggacacccagtactacaatggcaaaatacatgcctatgtggactaccctatc
tacgatgtgctccagatggtgggtaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgccagggttccaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgcatgcacgaccacttcaatgctgagatcgtc
accaagacggtggagaacaaacaggacgcagtggactacctgacctggaccttcctgtac
cgccggatgacccagaaccccaactactacaacttgcaaggcatgtctcaccgtcatctg
tctgaccacctgtcagagctggtggagaacaccctgcatgacctggagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgattgctgcctac
tactatatcaattacaccactatcgagttgttcagtatgtccctgaacgccaagaccaag
atccgtggattgattgagatcatttccaatgctgctgagtacaagaacatccccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccccacaaactgaacaac
cccaagttcaacgacccccatgtgaagaccaacctgctgctgcaggctcacttgtccagg
atgcagttgagcgctgagctccagtcagacacagaagagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaatggctggctgagccctgcgctggct
gctatggagctggctcagatggtcacccaggctatgtggtccaaggactcctacctcaaa
cagctgccctacttcacctctgagcacatcaaacgctgcatggacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acccagatagctgacgtggctcgcttctgtaaccgctaccctaacattgaactgtcctac
gaggtggcagagaaggagaacatcaagagtggaggtccagtgctggttctggtccagttg
gagagagaagaagaggtgactgggcccgttattgccccactcttcccccagaaacgtgag
gagggctggtgggtggtgattggagaccccaagtccaacagcctgatctccattaagagg
ctgaccctgcagcagaaggccaaggtgaagctggactttgttgcaccagtgctgggcgtt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
tttagcgtggatgtgaaggaggcagacagcgatggagacagtgattcagactaa
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integrated database retrieval system
