Salvelinus fontinalis (brook trout): 129853727
Help
Entry
129853727 CDS
T11136
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04142
Lysosome
sfon04144
Endocytosis
sfon05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129853727
04142 Lysosome
129853727
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
129853727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfon04131
]
129853727
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129853727
Membrane trafficking [BR:
sfon04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
129853727
Exosome [BR:
sfon04147
]
Exosomal proteins
Proteins found in most exosomes
129853727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Gp18_dom_I
HEAT_Nup120
IFS
Motif
Other DBs
NCBI-GeneID:
129853727
NCBI-ProteinID:
XP_055776049
LinkDB
All DBs
Position
4:38245640..38284234
Genome browser
AA seq
1681 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIIDMADPNN
PSRRPISADSAIMNPASKVIALKAAKCLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTEAAVYHWSMEGDSQPIKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKLHIIEVGQPATGN
QPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHELTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAVRSNLAGA
EELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECCEELGDLVKAVDPTLALSVYL
RANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPDQGLQFSQMLVADE
EPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFSHYDRAHIAQLCEKAGLQQRALEHYTDLFDIKRAVVHTHLLNPEWLVNFFGALSV
EDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTNTLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPDRVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNTPERFLKENTFY
DSAVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYVNRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEHISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSAYMEV
VSAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTGRLAELEEFVSGPNNAHIQQ
VGDRCYEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCCAC
VDGEEFRLAQICGLHIVIHADELEELISYYQDRGYYEELIGLLEAALGLERAHMGMFTEL
AILYSKFNPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVLTMMS
HPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDNKPLLMNDLLTILSPRLDHSRTVSYFT
KVNQTKLVKPYLRSVQSHNNKGVNEALNNLLTEEEDYQGLRASIDAYDNFDTIGLAQRLE
KHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKEAELAETLLQWFLEE
GRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEVEEKVTVD
KLEESESQRKTEEEVTEPTPIVFGQQLMLTAGSAPVAPQPGYPGGYGYAAPGYSPQPPYN
M
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcccagatactgccgatacgatttcaggaacatctgcagctgcagaacctgggggtg
aacccggctaacattggtttcagctacctgaccatggagtctgacaagttcatctgcatc
cgggagaaggtgggcgagcagaaccaggtggtgatcatagacatggccgaccccaataac
cccagcagacgtcccatctctgctgacagtgccatcatgaaccctgccagcaaggtcatc
gccctcaaagctgctaaatgcctgcagatcttcaacattgagatgaagagtaagatgaag
gctcacaccatgactgaggaagtcatgttctggaagtggatctctgtcaacaccgtcgcc
ttggtgactgaagcggccgtctaccattggagcatggagggggactcacagcccatcaaa
gtgtttgatcggcacgctagtctggccggatgccagatcataaactacagaacagacgaa
cagcagaagtggctcctccttatagggatctcggcacagcaaaaccgtgtggtgggggcc
atgcagctgtactctgtggacaggaaggtgtctcagcccatcgagggacacgctgcagcc
ttcggagagtttaaggtggagggcaacaccaaagcctccactctgttctgcttcgctgtg
cgcagccaggctgggggcaagctgcacatcatagaggtgggtcagccggctacagggaac
cagccgtttactaagaaggcggttgacgtattcttccctcctgaggctcagacagacttc
cccgtcgccatgcagattggcaccaagcacggtgtgatctacctgatcactaagtatggc
tatatccacctgtacgacctggagtcaggagtgtgtatctacatgaatcgcatcagcgcc
gagaccatcttcgtcaccgccccccacgaacttacctccggcatcatcggggttaacaag
aagggacaggtgttgtcagtgtgtgtggaggaggagaacatagtgaactatgccaccaac
gtgctgcagaacccagacctgggcctgaggatggccgtgcgttctaacctggccggggct
gaggagctgtttgccaggaagttcaacacactgttcgcccagggctcctactccgaggct
gccaaggtggccgcatccacacccaagggtatcctgcgcacagcggagaccatccgtaag
ttccagagcgtgccagcccagccgggccaggcctctcccctgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtgcta
cagcaaggacgcaagcagctgctggagaagtggctgaaagaggacaagctggagtgttgt
gaggagcttggtgacctggttaaggcagtagatcctacgctagccctcagtgtctacctc
agggccaacgtacccagcaaggtgatccagtgctttgctgagaccggacagttccagaag
atagtgctctacgccaaaaaggtgggctactctccagactgggtgtttctgttgaggaat
gtgatgcgggtcagcccagaccagggtctacagttctctcagatgctggtggcagatgag
gagcccctggccaacatcaaccagatagtggatgtgttcatggagggaagtctgatccag
cagtgtacctccttcctattggatgctctgaagaacaatcagccagccgagggccaccta
cagacacgcctactggagatgaacctcatccacgccccccaggtcgctgacgcgatcctt
ggcaaccagatgtttagtcactatgaccgtgcccacatcgcccagctgtgtgagaaggct
ggactgcaacagagggctctagagcactacactgacctgttcgacatcaaacgggctgtc
gtacacacacacctgctcaaccctgagtggctggtgaacttctttggcgccctgtcagta
gaggactcagtagagtgtcttcgggccatgttatcagccaacatccgacagaaccttcag
ctgtgtgtccaggtggcatctaaataccacgagcagctgggaacaaacaccctggtggag
ctctttgagtccttcaagagctacgagggtctgttctacttcctgggctccatagtgaac
ttcagtcaggaccctgacgtccattttaaatacatccaggcggcctgtaagacagggcag
atcaaggaagtggagcgcatctgtagagagagcaactgttacgacccggacagggtcaag
aacttcctcaaggaggctaaattgacagaccagctgccgttgatcatagtgtgtgaccgc
tttgactttgtccatgacctggtgctctatctctaccgcaacactctgcagaagtacata
gagatctacgttcagaaggtgaaccccagccgtctgcctgtggtgataggaggtctgttg
gatgtagactgtgctgaagacgtcattaagaacctgatcatggtggtgaggggacagttc
tccactgatgagctggtggcagaggtggagaagaggaacagactgaagctgttgttgccg
tggcttgagtctcgtatccatgagggctgtgaagagccggctacccacaatgccttggct
aagatctacattgacagtaacaacaccccggagcgcttcttgaaggagaacaccttctac
gacagtgctgtagtggggaagtattgtgagaagagagacccccacctcgcctgtgtcgcc
tatgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactccctgttc
aagagtgaggctcgctacctggtccgacggaaagacccagaactatgggccaacgttctt
gaggagaacaacccttatagacgccaactcatagaccaggtggtgcagaccgcgctgtca
gagacccaggacccagaggaggtgtctgtgacggtcaaggccttcatgacagctgacctg
cccaatgagctcatcgaactactggagaagattgtactggacaactcagtcttcagcgag
caccgaaacctccagaacctgttgatcctgacggccatcaaggcagaccggacgcgtgtg
atggagtacgtcaaccgcctggacaactacgacgcccccgacatcgctaacatcgccatc
agcaacgagctcttcgaggaggctttcgccatattcaagaagtttgacgtcaacacctcc
gccattcaggtcctgatcgagcatatcagtaacctggacagagcctatgagtttgcagag
cgttgtaatgaggccgcggtatggagtcaactggccagagcccagctccagagagacctg
gttaaagaggccatcgattcctacatcaaagctgacgacccgtcagcctacatggaggtg
gtcagcgctgccagcaagaacaataactgggaggacctggtgaagttccttcagatggct
cggaagaaggccagagagtcgtatgtagagacagagctcatctttgctctggctaaaact
ggcagactggccgaactagaggaatttgtcagcggccctaacaatgcccatatacaacag
gtgggagataggtgttatgaagaagggatgtacgatgctgccaagctgctgtacaataac
gtgtccaacttcgcccgcctggcctccacgctggtacacctaggagagtaccaagctgct
gtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgttgtgcgtgt
gtggatggggaagagtttcgattggctcagatctgtggtctacacattgttatccacgct
gatgaactggaggagctcatcagctactaccaggaccggggttactacgaggagctgata
ggcctgttggaggccgcgttgggtttggagcgcgctcatatgggcatgttcacagagctg
gccatcctctactccaaatttaacccccagaagatgagagaacacctggaactcttctgg
tcccgcgtcaacatccctaaggtgctgcgagcggcggagcagtcccatctgtgggcggag
ttagtgtttctgtatgataaatatgaggaatatgacaacgctgtcctcacgatgatgtca
caccctacggacgcttggaaggaggtgcagttcaaggacatcattgccaaggtggccaat
gtggagctgtactacaaatccctttccttttacctggacaacaaacctctgctgatgaat
gaccttctgaccatactgtcaccacggttagaccacagccgcacggtcagctacttcacc
aaggttaaccagacgaagttggtaaagccttacctgaggtcagttcagagtcataacaac
aagggagtcaacgaggccctcaataacctgctgacagaggaggaggactaccagggtctg
agggcgtctatcgatgcatatgataactttgacaccattggtttggcccagagactggag
aagcatgagctgattgagttcagacgcatcgcagcatacctctacaaaggcaacaaccgc
tggagacagagcgtggaactctgcaagaaggacaaattatacaaggatgcaatgctgtac
gctgctgagtctaaggaagctgagctggctgagaccctgttgcagtggttcctggaggag
ggcaggaaggagtgtttcgctgcctgtctgtttgcctcctacgacctgttgcaccctgac
gtggtgctggagctggcctggagacacaacatcatggactttgccatgccatacttcatc
caagtcatgagggagtacctcaccaaggttgatgaggttgaggagaaggtgacggtggac
aaactggaggagtcagaaagccaaaggaagactgaggaagaagtcacagaacccaccccc
atagttttcggtcagcagctgatgttgacggcaggctcggctccagtggctccccagccc
ggatacccaggaggctacggctacgctgccccaggctactccccccagcccccctacaac
atgtag
DBGET
integrated database retrieval system
