Salvelinus fontinalis (brook trout): 129855042
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Entry
129855042 CDS
T11136
Symbol
cnot2
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129855042 (cnot2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129855042 (cnot2)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129855042 (cnot2)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129855042 (cnot2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129855042
NCBI-ProteinID:
XP_055778273
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All DBs
Position
5:9034181..9041246
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AA seq
559 aa
AA seq
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MFSATRKKFVEGVESDYPDENMYYSQPSMYPHRSDKDVSALSARSHIPTTAPFDLEMLSS
PSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTPQLNRSLTQGTPLPSHITPTTGVPTM
SLHTPPSPSRGILPMNSRNMLNHSQVGQGIGMGGGRTNSMGSSGLGSPNRSPPSIICMPK
QQPARQPFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTVFNLPLTDGSENVTGLDLSDFP
ALADRSRREGSANPTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPTQDFSIHNEDF
PALPGPNYKDSTLSNDDSKTNLNSTGKSTSSADGPKFPGDKTSSAQNNSQKKGIQVLPDG
RVTNIPGGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFAS
PWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDLLQLLAA
VELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVAKEFHLEYEKL
EERPHVPSTFNYNPAQQAF
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtggaaagtgactaccctgatgag
aacatgtactacagccagccgtccatgtacccacatcggtcggacaaagacgtaagtgct
ctgtctgctcgatcgcacatccctactacagctccctttgatcttgaaatgctctcgtct
ccctcaccgtcgtcatcaggtcaactatcccagcttggggccagtttatatggcccacag
agtgcactaggcttctcgataaggggcatgggtaacaacacgcctcagttaaaccgcagc
ttaacgcaaggcactccgctaccgagccatatcacccccaccactggggtacccaccatg
tccctccatactccaccctcgccaagcagggggatcctgccgatgaactcgaggaacatg
ctgaaccactcccaggtgggccagggcatcgggatgggcggcggcaggaccaacagcatg
ggcagctcagggctgggcagccccaaccgcagcccccccagcattatctgtatgcccaaa
cagcagcctgcacggcagcccttcaccatcaacagcatgtcgggattcgggatgaaccgg
aaccaggcgtttggaatgaacaactcgttatcaagcaacatcttcaatggcacagtcttt
aacctgcccctcacagacggcagtgaaaacgtgacggggctagacctgtctgacttccct
gcgttagcagacaggagtcggagggaaggaagcgcaaacccaacgccactacttaaccca
ctagctggaagggccccctatgaagcctcttctcttcatctcatgacctcatcagttggc
atggtgacgaagccatcgaacgagccgacgcaggatttctccatccacaacgaggacttc
cctgcactgcctggtcccaactacaaggactccacgttgagcaacgatgacagcaaaaca
aacctaaactctacaggcaagagcacgtccagtgcagacggtcctaagttccccggagac
aagacgagctcagcacagaacaacagccagaagaaagggatccaggtgttacctgacggg
cgggtgacgaacattcccgggggaatggtgacggaccagtttgggatgattggcttgctg
acgtttatccgagcagcggagacggacccgggcatggtgcacttggcactggggagtgac
ctcacaacgcttggactcaacctcaactctccagaaaacctgtaccccaagtttgcttcc
ccctgggcatcagcaccgtgtcgacctcaagacattgacttccacgtcccctctgagtac
ttaaccaacatccacataagggacaagctggcagctattaaactggcgcggtacggtgaa
gacctgctgttctatctgtactacatgaacggaggagacctgctacagctcctggcagca
gtagagctctttaaccgggattggcggtaccacaaagaggagcgggtgtggatcacgcgg
gcgccgggcatggagcccacactaaagaccaacacctatgagagggggacttactacttc
tttgattgtcttaactggaggaaggtagccaaggagttccacctggagtacgaaaagcta
gaagagaggccccacgttccatctaccttcaactacaacccagctcagcaggccttctga
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