Salvelinus fontinalis (brook trout): 129855388
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Entry
129855388 CDS
T11136
Symbol
fip1l1a
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129855388 (fip1l1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129855388 (fip1l1a)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129855388 (fip1l1a)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
129855388
NCBI-ProteinID:
XP_055778981
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Position
5:25567446..25615250
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AA seq
514 aa
AA seq
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MSAEMDKATDASGGDEDEWLYGDESEEKAEEEAPNSAKAQPTAEEVQENGVVKQDTGQED
EESDSDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKAAGRTHASVGPKAKGVDL
DALGSVNGIPVLEVDIESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRLRMGYEG
MNHASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKPSGTIDVIGGQTG
TISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSAPP
LIPPPRIPINVPPPGYPPGAPPPSLIPTLDSGRSGGYDGRSAPPYPPFPPGVYPPPPPGS
AAASWAGVFDSAKAWEYYAQRDNERERHKERDRTRERGHEKEREREREHNPSSQVVNSEE
DRHRHRDYGERGYDRHHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDS
HRRHKHKKVKRSREDKEPSQELSADQENQSEPTE
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaagcaactgacgcaagcgggggcgatgaagacgaatggtta
tatggagatgagagtgaggagaaagcagaggaagaggcacctaatagtgcaaaggcccag
ccgactgctgaggaggtccaggagaatggagtagtgaagcaggatacaggccaggaagat
gaagaaagtgacagtgacagtgaggatgatgatgacgtgtgtgtaaccattggcgatata
aagaccggaggctcatctcagcctttcaatgcttttggatccacaccagttaatctcaac
attaaggctgcagggagaacacatgcgtcagttggccccaaagccaaaggagtggacctg
gatgcactgggcagtgttaacggaatccctgtgttggaggtcgacatagagtcttttgaa
gaaaagccgtggagaaagcctggatcggacctctcggactactttaactatggctttaac
gaggacacctggaagacctactgtgagaaacagaggagactacgcatggggtatgagggc
atgaaccacgcttcagccactaaaatcatggtccaccagggacgttcagcccatggtgat
agggatggggccctttcctgctttaggtctgactattcctcccccagcaaccactacaat
tcaggctcctccagtagaaagccaagcggcaccattgatgttattgggggacaaactggt
accatcagccgggtagagggacgaagacgtcacaatatagaaggaaataacatccaggtg
ctttctgagcccccctctgatgctgagcctactcccactaagatgccccccttttttcct
cccaacatccccccgcctcctttcccgcctccaccccacaatgtcagctccgcccctcca
ctcattcctccaccacggatccccatcaatgttcctccacctggctaccctcctggcgca
ccaccaccttctctgattcctaccttagacagtggacgctctggaggctatgatggtcgc
tcagctccaccgtacccccccttccctccaggtgtgtaccctcctcctcccccgggtagc
gcagcagcctcctgggccggggtattcgacagtgccaaggcctgggagtactacgcgcag
cgggacaacgagcgagagcgccacaaggaaagagacagaaccagagaacgcggacacgag
aaagaaagagagagggagagagagcacaacccttcctcccaggtcgtcaacagtgaggag
gatcggcaccggcacagggactatggggagagaggatatgaccgccaccaccacgagaga
tccagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggagggg
agacacaagtcctcaagcagtagcagcaggaggagacatgagagtgaggagggggacagt
catcgaagacacaaacacaagaaggtcaagaggagcagagaggacaaggagcccagccag
gaactctctgctgaccaggagaaccaatcagagcccacagagtga
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