Salvelinus fontinalis (brook trout): 129856209
Help
Entry
129856209 CDS
T11136
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129856209 (rnf40)
Enzymes [BR:
sfon01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129856209 (rnf40)
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
129856209 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
zf-C3HC4
BRE1
CC_Bre1
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-rbx1
Ice_binding
Motif
Other DBs
NCBI-GeneID:
129856209
NCBI-ProteinID:
XP_055780329
LinkDB
All DBs
Position
1:47772801..47789718
Genome browser
AA seq
972 aa
AA seq
DB search
MSGTGGGKRASGGDSSPGPPEKKCKKEEKPTTTLIEPIRIGGVSSTEEMDMKVIQFKNKK
LSERLEQRQTMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLEENVHVLRQRIDPTVVP
APPTTPVSAPTPMDADGMMIPPPPPSAPLPAPEHEEQQPPPPDGMEIAREPQQDSTIAPP
PTTTLSESTKAFLSTLDNSSEEELSLQLRDRMQFSKEAAACMVCVFDRLHSRIDGLCTQI
LSAACEDDSQEEMLRLNRTLLEENGRLQDLASSLQGRHHKMSMEYNELVDKVTSSETKVS
EMETAVEDLQWDIEKLRKREQKLNKHLAEALEQLTSGYYTTGSSGGLPGGQITLNIQKFE
SLNAELEQNQELANNRMADLEKLQQELQEAVRESEKLKLDLKNIPEDVVKETVDYKCLQS
QFSLLYNESLGVKTQLDEARALLLTAKNAHLRQIEHMESDELSLQKKLRTEVIQLEDTLA
QVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDVQRYKRKLRETQM
EINKLRCQSGDTGLLSLEEPVSDSLEVKKEEDEDQEEEEERRRELERQRARERERETERE
RERERERERQRSEELKRKDSDTLKMLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQL
MAAERKSKAEVDELRVRVRELEERERKESKKLADEDALRKIRVAEETIDHLQKKLTATKQ
EEEALLSEMDVTGQAFEDMQEQNSRLMQQLREKDDANFKLMSERIKSNQIYKLLREEKEE
LADQVLTFKTQVEAQLLVVQKLEEKEGILQSSLTNLEKELGVRIQALELNKRKAVEAAQL
AEDLKVQLDHTQSKLREIQVSVSENRNARERELGNLKRAQEDLSRLRRKLEKQKKVEVYT
DADEILQEEINQYKAKLRCPCCNTRDKETVLTKCFHVFCYECLKTRYDTRQRKCPKCNCA
FGANDFHRIYIT
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcaccgggggagggaagcgagcctcaggtggggacagctcccctggtccacct
gagaagaagtgtaaaaaagaggaaaagcccaccaccactctcattgagcccatacgcatt
gggggagtgtcctctacggaggagatggacatgaaggtgatccagtttaagaacaaaaag
ctgagtgagcgtctggagcagaggcagactatggaggatgagctgcgggagaagatcgag
aagctggaaaagcgacaagctactgacgataccacactgctcattgtgaatcgctactgg
tcccagttggaagaaaatgttcacgtcctgcgccaacgcattgaccccacggtggtcccg
gcaccgcccactactcctgtttctgcccctaccccaatggacgcggatggcatgatgatc
ccaccaccccctccttcagccccactcccagcgccagaacacgaagagcaacagcctcca
ccacccgacggtatggagatagctcgtgaaccacagcaggactcgacaatcgccccgccg
cccactactaccctcagtgagagtaccaaagccttcctctccactttggacaacagcagt
gaggaggagctcagcctgcagttgcgggacaggatgcagttcagcaaggaggccgctgcc
tgcatggtctgcgtcttcgacaggctccacagccgcatcgacggcctatgcacccagatc
ctgtccgcagcgtgtgaggatgatagccaggaagagatgctccgtctgaatcgtactctg
ctcgaggagaatggcagactgcaagacctggcctcctccctgcagggcagacaccacaag
atgtctatggagtacaacgagcttgtggataaggtgacaagctcggagaccaaggtgtct
gagatggagactgctgtggaggatctgcagtgggacatcgagaagctccgtaagagggaa
cagaagctcaacaagcatctggctgaggcattggagcagttgacctcgggctactacacc
actggcagctcaggggggctacccggtggccagatcaccctcaatatacagaagtttgag
agcctgaatgcagagttggagcagaaccaggagctggccaacaaccgcatggcagacctg
gagaaactacagcaggagctccaggaggctgtcagggagagcgagaaactcaagttggac
ctgaaaaatattccagaggatgtggtgaaggagaccgtggactacaagtgcctgcagtcc
cagttctccctgctctacaacgagtctttgggggtgaagacccagctggatgaggcccgg
gccctgctcctcaccgcaaagaacgcccacctcagacagatagagcacatggagagtgac
gagctgtccctacagaagaagctccgcacagaggtcatccagctggaagacacgctggcc
caggtgcgcaaggagtacgagatgctgcgcatcgagtttgagcagaacctggcggccaac
gagcaagcaggcccaatcaacagagagatgcgccacctcatcagcagcctccagaaccac
aaccaccagttgaaaggtgacgtgcagcgttacaagcggaagctccgagaaacacagatg
gagatcaacaagttgcggtgtcagagtggtgacaccgggcttctgtcattggaggagcca
gtgagcgacagcctggaggtgaagaaagaggaggatgaagaccaagaggaggaggaggag
aggaggagggagctggagagacagcgggcccgggagagagagagggagactgagagggaa
cgagagagggagcgagaaagagagcgacagcgcagcgaggagttgaagaggaaagattcg
gacaccctgaagatgctgagggcggaacttaagaaagcccaggagtctcagaaggagatg
aaactacttttggacatgtacaaatcagctcccaaagagcagagggacaaagtgcagctt
atggcagcagagcgcaagtctaaagccgaggtggatgagttgcgggtgcgtgttcgagag
ctggaggagcgggagaggaaggagagcaagaagctggctgatgaggacgctctcaggaag
atccgtgtggcagaggagacaatcgaccacctacagaagaagctcacggccaccaaacag
gaggaggaggccctactgagtgagatggacgtgacgggccaggcctttgaggacatgcag
gagcagaacagccggctgatgcagcagctgagggagaaggacgacgccaacttcaagctg
atgtcggaacgcatcaagtccaaccagatctacaagctgctgagggaggagaaggaggag
ctggctgaccaggtgctcacctttaagacccaggtggaagcccagttattggttgtacag
aagctggaggagaaagagggcatcctccagagctcactgaccaatctggagaaagagtta
ggagttcgcatacaagcactagaactcaacaagaggaaggcagtggaggcagcccagctg
gctgaggaccttaaggtgcagctggatcacacccagtccaagctgagggagatccaggta
tctgtgtctgagaaccgcaacgccagagagagggagttgggaaacctcaaaagagcgcag
gaggacctgtccaggctacgacgaaagctggagaaacagaagaaagtggaggtgtacact
gatgctgatgagatcctgcaggaggagatcaaccagtacaaggcgaagctgcgttgtccg
tgctgcaacacccgcgacaaggagacggtgctcaccaagtgtttccacgttttctgctac
gagtgtctgaagacgcgctatgacacccgacaaaggaagtgccccaagtgcaactgtgcc
ttcggggccaacgacttccaccgcatctacatcacctaa
DBGET
integrated database retrieval system
