Salvelinus fontinalis (brook trout): 129856837
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Entry
129856837 CDS
T11136
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sfon00535
]
129856837
Proteoglycans [BR:
sfon00535
]
Extracellular matrix (ECM) proteoglycans
Others
129856837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_Tor_3rd
Pur_ac_phosph_N
DUF4959
VWA_3
Fn3_nematode
Motif
Other DBs
NCBI-GeneID:
129856837
NCBI-ProteinID:
XP_055780518
LinkDB
All DBs
Position
6:complement(609174..863226)
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AA seq
1790 aa
AA seq
DB search
MLIVGLPIRTWCPLLFLVLAVHFPAPAQGQVPAPRRLRFKVLATSKLHVSWKEPKGNFDG
YRVLYHSEPGEEKKELRVSKGDNKVVIQDFDAMKEYHVRVLAVRGNQQSRALQGKYAAED
LEGEGGEAESTMPLRLDDTRGTEEINEISGADPFVCTTQAIADIVILVDGSWSIGRLNFR
LVRMFLENLVSAFSVGIDQTRIGLAQYSGDPRIEWHLNAFATKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPAQSLRDAGIELFAIGVK
NADENELRAIASEPDNTHVYNVADFSIMSSIIEGLTQIVCERVEEQDKEIKGESAEQETQ
GAPQDLVTSEVTARSFRVSWSHAPGSVEKYRVVYYPATQGGRPEEAVVDGTENSVVLRYL
NSLTEYQLAVFAVYTSSASEALRGSETTLALPMVNGLELYDVTHNTMRARWSGVQGVSGY
MVLYAPLTKDRASDEKEMKVSDAVTDLQLEDLTPATEYTVTVYAMYGEEASDPMTSQQTT
LPLSPPKNLVFSEVDHNSAKLSWDAASRKVTGYRIMYVKTDGLKTDEVDVGPVTSWTLND
LTSAREYEVAIFGIYDEGQSEALSGSFTTEPVPGPLDLQASEVTAESFRVSWGHSAPGIV
LYKLTWAPYDGGDTKEMVLSGDVDSFLLSGLSPNTEYEVMLQAIFRDQSESDAVLVVETT
LARTTTVATTTPVVRQAVRGLQVQEETTYSLEVSWQLEDPKVDQYRVTYVSLTGDRNEES
VLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGISVSSVGRTLPLSAPSNLRVSEEWF
SRFRITWDTPPSPTLGFRVVYQPTSVPGSALETFVGDDVNTMLILNLQSDTEYTVKVISS
YTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSMCVQWQPPRQADLYRVVIESLLNGQKQE
VRVGGSASRQCFYDLTPNSQYKISVSTQLQDMEGPAVTTVTTTLPAPTQPPTPPPTSPPR
PTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDLIGPDGTQVAIAQ
FSDDARTEFMLNSYANKETLLDAIRRITYKGGNTKTGRAIKHVKESIFTSEGGVRRGVPK
VLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMDMFGLVEKEYSNVEGVSLEPGSF
NSFSCYRLHKDALVSQPTKYLHPEGLPSDYTITILFRLLPDTPQEPFALWEILNKDNEPL
VGVILDNGGKTLTFFNYDYKGDFQTVTFDGPDIKKMFYGSFHKLHVAISKTTARVVVDCK
VVGGKPINAAGNISIDGVEVLGRMVRSIGKRDSSAPFQIQMFDIICSTSWASRDKCCELP
GLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAGIRGARGDRGEPGNVGPQGLVGDKGP
PGPQGPPGPQGPSGHSIQGPPGGDGEKGEKGDVGLPGPQGIGGSPGGPGRDGPVGQRGLP
GKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGDQGPPGSAGTKGDKGERGDLQSQATV
RALARQVCEQLIQSHLSRYSSILNQIPSQSVSVRTVPGPPGEPGRRGLPGPQGEGGPTGR
PGFPGTNGQDGRPGERGIPGEKGERGSQGVGTQGPRGPPGPPGLLGEGRTGSQGPVGRPG
SQGTPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGDATPGNKLTTPDNKLT
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgtaggactcccaataaggacgtggtgtcctctgctcttcctggtgttggct
gtacatttcccagcccctgcccagggtcaagttccagctcccagaagattacgttttaaa
gtgctggccaccagcaaattacatgtgtcttggaaagagccgaaagggaatttcgacggc
tacagagttttataccacagtgaaccaggcgaagagaagaaggagctgcgggtttccaag
ggggataataaagtggtgatacaggactttgatgccatgaaggagtaccacgtcagggtt
ctagctgtgagagggaaccagcagagcagagcactacaagggaagtatgcagctgaagac
ctggagggtgagggaggagaggctgagagcacaatgcctctgagacttgatgacaccaga
ggcactgaggagatcaacgagatatctggagccgatccttttgtctgtacgactcaggcc
atagctgacatagtgatcctggtggatggatcctggagcatcggcaggctcaacttccgc
ttggtccgcatgttcctggagaacctggtcagcgctttcagcgtcgggatcgaccagacc
aggataggtctggcccagtacagtggggaccccaggatagagtggcatctgaatgccttc
gccactaaagatgcagtcctggatgctgtgaagaacctgccctataagggaggcaacaca
ctgacaggcctggccctgacctatatcctggagaacagcttcaagcccgagtcaggctcc
aggagcggcgtacccaaagtcggtatcctaatcacagatgggaagtcccaggatgacgtg
atcccccctgcccagagcctgagggacgctggcatcgaactcttcgccattggtgtaaag
aatgctgatgagaatgagctgagggccatagcttctgagcctgacaacactcatgtgtac
aacgtggcagacttcagcatcatgagctctatcatagagggactgacccagatagtctgt
gaacgggtagaggagcaggacaaggagatcaaaggagagtctgcagagcaggagacacag
ggtgcccctcaggacctagtgacatcagaggtgacagccaggagtttcagggtgtcctgg
agtcacgctcccggcagtgtagagaagtaccgtgtggtgtactaccctgctacccaggga
ggacggcctgaagaggctgtggtggacggcacagagaactctgtggttctgcggtatctc
aactccttaacagagtaccagttagctgtgtttgctgtctacaccagctcagctagcgag
gcacttcgtggcagcgagaccacattggctctccccatggtgaacggcctggagctgtac
gacgttacccacaacaccatgcgggcgcggtggagcggtgtgcagggcgtctcggggtac
atggtcctatacgcccccctgaccaaggaccgggcctccgacgagaaagagatgaaggtg
tcagacgcagtaactgatctgcagctggaggacttgactcctgctactgagtacactgtg
acagtctacgccatgtatggagaagaagctagcgatcctatgactagccagcagaccacc
ttgccactgagccctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaa
ctgtcgtgggacgctgcctctaggaaggtgacaggataccgcatcatgtacgtcaagact
gacgggctaaagactgatgaggtggatgtgggtccagtcacgtcctggactctgaatgac
ctgacgtctgcaagggagtatgaggtagccatctttgggatctacgacgagggccaatca
gaagccctctctggcagcttcaccaccgaacctgtgccaggccctcttgacctccaggcc
agtgaggtcactgcagagagcttccgggtcagctggggtcactctgctccgggcatcgtc
ctctacaaactgacctgggctccttatgatggaggggacactaaggagatggttctaagt
ggtgatgtggactccttcctcctcagtggactgagccctaacacggagtatgaagtgatg
ctccaagccatcttcagagaccaatcagagagtgatgcagtgttagtggtggagacaaca
cttgccaggacgacaacggttgccactacaacgccagtggtgcgtcaggcggtgagaggc
ctgcaggtccaggaggagaccacctacagcctggaggtgtcatggcagctggaggatcct
aaggtggaccagtacagagtcacctacgtcagcctcacaggagaccgcaacgaggagtca
gtcctggtgcctgggcagcagaccacagtccttctccagcctctgctgtctgacacagag
cacaaggtgacggtcaccccagtctacacagatggacaggacggcatcagtgtgtcttct
gtgggcagaacattgcccctctcggcgcctagcaacctgagggtgtctgaggagtggttc
agccgcttccgcatcacctgggacacgcctccttctcccaccttgggcttcagggtagtc
taccaacccacctctgtgccggggtcagctctggagacctttgtgggagacgacgtcaac
accatgctgatcctgaacctgcagagtgacactgagtacactgtgaaggtcatctcttcc
tacaccacgggatccagccaaccactccagggcaccgccaagacattgtacctgggcgtg
accaacctgaacacctaccaggtaatgatgtccagtatgtgtgtccagtggcagccccct
cgtcaggctgacctctacagagtggtcatcgagtctctgctcaatggccagaaacaggaa
gtgagggttggaggatctgcgtctcgacagtgtttctatgatctgacccctaacagccaa
tataagatcagtgtttccacccagctacaggacatggaggggcccgccgtcaccaccgtc
actacaacactccccgcccccacccagccaccgacaccaccccccacgtcacccccccgg
ccgaccataccgcccgccaaggaagtctgtaaggcagccaaagctgacctggtcttcttg
gtggacggctcttggagcatcggagacgacaacttccagaagattatccgcttcctgtac
agtacgatgggagctctggatctgattggtcctgacggcacacaggttgctatagcacag
ttcagtgatgatgccaggacagagttcatgctgaactcatacgctaacaaggaaacgctg
ctcgacgccatcaggcgaatcacatacaagggagggaacaccaagacaggccgagccatt
aagcatgtgaaggaatctatcttcacctcagaaggaggcgtgaggaggggggttcctaaa
gtactggtggtcctcaccgatggccgttcccaagacgacgtcaacaaggtctccaaggag
atgcagatggaaggctacatcatctttgccatcggctttgctgatgcggactacggagag
ttggtgaacatcgccagcaaacccagcgacagacacgtcttctttgtggacgatttggac
gctgtcaagaaaattgaggagcagctgatcacttttgtgtgtgaggctgccactgccact
tgtccatcggttctgatgagtggcaacactatggcaggcttcaggatgatggacatgttt
ggcctggtagagaaggagtacagtaacgtagagggagtgtccctggaaccaggctccttc
aacagcttctcctgctacagactgcacaaagacgccctggtctcacagcccaccaagtac
ctccacccagaaggtctgccctctgactacaccatcaccatcctgttccgcctgctacca
gacaccccccaggagccctttgcattgtgggagatcctcaacaaagacaatgaacccctg
gtgggggtcatcctggacaatggtgggaagactctgacattcttcaactacgactacaag
ggagacttccagacagtcacttttgacgggcctgacatcaagaagatgttctatggcagt
ttccataagctccacgtggcgatcagtaagaccacagccagggtggtggttgactgtaag
gtagtgggaggaaagcccatcaacgcggctggcaacatcagtatagacggggtggaggta
ctgggacgcatggtgcgatccatagggaagagggacagctcagctccgttccagatccag
atgtttgacattatctgcagcacgtcctgggccagtcgagacaagtgctgtgagctccct
ggactgaggctggaggaggactgtcctgccatgccccatgcctgtagctgttctcaggac
agtaaaggacctcccggacccacaggacctcccggaggtgctggtatcagaggggccagg
ggagatcgaggggagccaggcaatgtggggcctcaaggactagttggtgataaaggtcct
ccaggaccacagggcccccctggtcctcaagggccgagtggacattccatccagggacca
ccgggtggtgatggtgaaaagggagaaaaaggagatgttggtttaccaggacctcagggt
attggtgggtctcctggcggaccaggaagagatggaccagttggacagaggggcctgcct
gggaaggatggaccacaaggacagcagggtactacagggcccgtcggcagtcctggagcc
cccggggcccctggtggaagtggctctcctggacccctgggagaccagggaccacctggc
tctgctggtaccaaaggagacaagggtgaacggggagacctgcagtctcaagctaccgtc
agggccttagcacgccaagtgtgtgagcaactgattcagagtcacctgtctcgctacagc
tccatcctgaaccagatccccagccagtcagtgtctgtgaggactgtaccgggacctcca
ggagagcccggtcgcaggggtctgccagggccacagggagagggggggcccacaggcaga
ccagggttccctgggaccaacggacaggatggacgaccgggggagagaggtatcccagga
gagaagggggagagggggagtcaaggtgtggggacacagggccccagaggtcccccaggg
ccaccaggtcttctaggagagggccgtacaggcagccaaggccccgtcggtagaccaggc
agccagggcaccccaggacgaccgggcacccctggatccacgggccctgctggcgctgct
ggctactgcgaccagaactcctgtttgggttacaacgttggagatgctaccccgggcaac
aagctaacaaccccagacaacaagctaacttag
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integrated database retrieval system
