Salvelinus fontinalis (brook trout): 129857349
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Entry
129857349 CDS
T11136
Name
(RefSeq) LIM domain-containing protein 1
KO
K16682
LIM domain-containing protein
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129857349
03036 Chromosome and associated proteins [BR:
sfon03036
]
129857349
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129857349
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
129857349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
129857349
NCBI-ProteinID:
XP_055781478
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All DBs
Position
6:complement(22646577..22685226)
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AA seq
662 aa
AA seq
DB search
MDKYDDLDLEASKFLEDLNMYEASRDGLFRMKRDAGNNSDFEETRRVFASKMTKIHIQKQ
QEEIAKNNLAVRMNGGHNRAADSTFYTKDRPPINSYRQAGEAAAKPPILSGPMPGTASAA
SQYAPYDALKHHSPSQQPYSYGNNYDNKERFEPHSYHHALSPTSPGNATTHASGRPASPS
VTWASYSSSPVGSSELMCSPSQQPPHHSPSPSFSDSLPSQSPTRLHQSKAATLLVRQRSP
TVADAGAAADWMRSLGNPELIAPLPLSAFTGGADLYQHLSPQPAPVTPPTGPYSAAPSMA
PRPTANQGNLRQNGLSQSPVALTPSSTPAQVAVPPVPPSETAQPKATTGAYFPASASPSG
TSVSRSFGQGQGIGQAQGRQVAMGVDVPSGLDSQLTSGGEACQLQLQPQSLKLPCQTLHV
QPEQGPSAAEIKLEALTKRLEKEMDAQPKADYFGSCVKCNKAVYGATEACQAMGSLYHDV
CFTCSACSRRLRGKAFYYVGGKVFCEEDFLYSGFQQSADKCNACGHLIMDMILQALGKSY
HPGCFRCVICNDSLDGVPFTVDTENKIYCVKDYHRVLAPKCAACNQPILPSEGSDETIRV
VSMDKDYHVECYHCEDCQMELNDEEVHRCYPLDGHLLCHACHLKHIEPGCASPTAASYQH
QF
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttggatcttgaggcaagtaaatttttagaagacctcaatatg
tatgaggcatctagggacgggttgttccgaatgaagagggatgcagggaacaactccgac
tttgaagaaaccaggagggtttttgcctccaaaatgacaaaaatccacatacagaaacag
caagaggaaattgccaaaaacaatttggcagtgagaatgaacgggggccacaacagagcg
gcagacagcacgttttacaccaaagacaggccgcctatcaatagctacagacaggcagga
gaagctgcggccaagcctcccatactctctggcccgatgccaggcaccgccagtgccgcg
agtcagtacgcgccctatgacgctctgaaacaccattcacccagtcaacagccatacagt
tacggaaacaattacgataacaaggagcgttttgagccgcattcttaccaccacgccttg
agtcccaccagcccagggaacgcaaccacacatgcttctggtcgccctgccagtccctct
gtaacttgggcctcttactcttccagccctgttggatcatcagagcttatgtgcagccca
tctcagcagcccccacaccactcaccatctccctccttctctgacagcctaccatctcag
agccccactagactgcaccagagcaaggctgccactctactagtgcggcagagatccccc
acggtggctgatgctggggctgcagcagactggatgcggagcttggggaacccagagctg
attgcacccctccctctgagtgccttcactggtggagctgacctgtaccagcatctgtct
ccccaacctgcccctgttacaccgccaacaggcccttactcagcagcaccctccatggcc
ccaagaccaaccgccaaccagggaaatctacgccagaacgggctctctcagagtcctgtg
gctctcacccccagctccacccctgctcaagtggctgtcccacctgtacccccatctgag
acagcccagcccaaagccaccactggagcttacttccctgcctctgcctctccctctgga
accagtgtctcaagaagctttggccagggtcaaggtataggccaggcgcagggcaggcaa
gtggccatgggggtggatgtgccctctggcctagacagccagctgacctctggtggggaa
gcatgccagctccaactccagccccagtctctcaaactgccctgccagactctccatgtc
cagccggagcaggggccgtctgccgccgagatcaaattagaagccctaaccaagcgtctg
gagaaagagatggacgcccagccaaaggcagactacttcgggagctgtgtgaagtgtaac
aaggcggtgtacggagccactgaggcctgccaggctatgggaagcctctatcatgatgtc
tgcttcacctgcagcgcctgcagcagaaggctacgggggaaagcattttactacgtcggt
gggaaggtgttctgtgaagaggactttctgtattctggattccagcagtctgcagacaag
tgtaacgcatgcggacatctgatcatggatatgatcctgcaggcccttgggaagtcctac
caccctggctgtttccgttgtgtcatctgtaacgacagtctggacggagtgcccttcact
gtggacacagagaacaagatttactgtgtcaaagactaccacagggtcttggcccccaaa
tgtgcagcatgtaaccagcccattctgccttcagagggctctgatgaaaccatccgagtg
gtatccatggataaagactaccacgtggagtgctatcactgtgaagactgtcaaatggag
ctgaacgacgaggaggtgcaccgctgctacccgctggacggccacctcctctgccacgcc
tgccacctgaagcacatcgagccgggttgcgcctcgcccaccgctgcctcctaccagcac
cagttctag
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