Salvelinus fontinalis (brook trout): 129857725
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Entry
129857725 CDS
T11136
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129857725
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
129857725
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
129857725
NCBI-ProteinID:
XP_055782212
LinkDB
All DBs
Position
6:34480975..34497943
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AA seq
656 aa
AA seq
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MDQAFPSLQTPATELQLRVDFFRKLGYSPMEVRAALLKLGLSTDTNSVLGELVRSGASTA
TSNSTIPESGEDTTGHTVSSMASSRTHGSQGDRPVSLLEDRGDTDSGLKPIVIDGSNVAM
SHGNKEVFSCRGIELAVIYFLDRGHSTVIVFVPSWRKEQPRPDVPITDQHILMELEKKKI
VVFTPSRRVGGKRVVCYDDRFIVKLAYESDGVIVSNDTYRDLQGERPEWKRCIEERLLMY
SFVNDKFMPPDDPLGRHGPSLENFLRKKPLLPEHKRQLCPYGKKCTYGVKCKFYHPERTH
QSHCSLADELREKARLSSVKEDRNHMMSHLRGPQSDPSPFPSYSLENDLEHRLTLEHRGS
LREGPNSQVTENMLLSWDGPHSSRNQQARSPTAVGQGQMDWPSMLSPYATTDLPYASISH
ECLDSGFGTYESQYSDMSHGHSKSFSPRQQQQQQGFPSGSRHPGMHPERLAQDSLQPCRC
CFHVAPFTGPQQQQHHSNPHLESQSQPRYDTYSPSLFPPNMHHYSLPCNFQQGGVGARNF
HPHQHPQKYWSDPFHGGVPQARASCSLTPSPHHHPPTPHGAPHSCSSYRNQQELNSWAQP
PPPSAFDTDREELRKKLQAIFNPHQVDTVMGMFPHLMDSQKLAAEILNLKSDGGAF
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcctttcccagtctccagaccccagccactgagctccaactcagggtggac
ttcttcagaaagttgggctactcccccatggaggttcgggccgccctgcttaagctaggc
ctgagtacagacaccaactctgtactgggggagttggtccgtagtggagccagcactgct
acttctaactccaccattcctgagagtggtgaagatactactggccacacagtctccagc
atggcctcctctaggacccatggctcccaaggagacagaccagtctcattactggaagac
aggggggacacagacagtggactgaaacctatcgtcattgacggcagcaatgtggccatg
agtcatggtaacaaggaagtgttctcctgtaggggaattgagttggcagtgatctatttc
ctggatagaggtcactcaactgtcattgtgtttgtgccctcctggcgcaaggagcagccc
aggcctgatgtccccatcacagaccaacacattctaatggagctagagaagaagaagatc
gttgtcttcactccctcgagacgtgtcggtggtaaacgggtggtctgctacgacgaccgt
tttattgtgaagctggcctacgagtcggacggcgtgatcgtgtctaacgacacctatagg
gacctccagggagagcgtccggagtggaagcgctgtatcgaggagaggctgcttatgtac
tctttcgtcaatgacaaattcatgcccccagatgacccgcttggtcgtcatggtcccagt
ctggagaacttcctgaggaagaagcctctactaccagaacacaaacgccaactctgtcct
tatggtaaaaagtgcacgtacggcgtaaagtgtaagttctaccaccctgagcgcactcac
caatcccactgctcattggctgatgagctcagggagaaggcaaggctctcctcagtaaaa
gaggaccggaatcacatgatgtcacacctgaggggcccccagtccgacccgagccccttt
ccctcctattctctggagaatgacctggagcacaggctgacgttggagcaccgcggttcc
ctgagggagggtcccaatagccaggtaactgagaacatgttgctgtcctgggatgggcca
cactccagtaggaaccagcaggcccgcagccccacagcagtaggccaaggacaaatggac
tggcccagtatgctctccccctacgctactactgacctcccctatgccagcatctcccat
gagtgcctggactctggttttggcacctatgagagccagtactcagatatgtcccacggc
cacagcaagtccttcagtcccaggcagcagcagcaacagcagggcttcccctctggttcc
agacatccaggcatgcatccagagaggctggctcaggacagcctccagccctgcaggtgt
tgtttccatgtggctcccttcacaggtccccagcagcagcagcaccacagcaacccacac
ctcgagtcccaatcccagccaaggtatgacacctactcgccttctctgttcccacccaac
atgcatcactacagcctcccctgcaacttccagcaaggcggggtgggggcacgtaatttc
cacccccatcagcacccccagaagtactggtcagaccccttccatggcggggtcccccag
gctagggcatcgtgtagcctcaccccaagcccccaccatcacccccctactccgcatggg
gccccccactcatgctcctcttacaggaatcagcaggaactcaactcctgggcccagcca
cctccaccttctgcctttgacacagacagagaggagctccgtaagaaactgcaggccatc
ttcaacccccaccaagtagatacggtcatggggatgttccctcacctgatggactcccag
aagctggctgcggagatcctcaatttaaaatctgatggaggggccttctga
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