Salvelinus fontinalis (brook trout): 129857908
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Entry
129857908 CDS
T11136
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129857908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129857908
Enzymes [BR:
sfon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129857908
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129857908
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129857908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
129857908
NCBI-ProteinID:
XP_055782570
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All DBs
Position
6:complement(46246799..46267254)
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AA seq
590 aa
AA seq
DB search
MLSVDRYNVQLLKKLSPSVTAGMPKEKYEPPDPRRMYTIMSTEEAANGKKSYWAELEITG
NVRSLSPSLWTLTHLTALHIADNCLSRIPPDIAKLHNLLYLDLSSNKIRSLPAELGHMVC
LRELLLNNNQLRVLPFELGKLFQLQTLGLKGNPLAQEIMSLYQEHDGTRKLLNYLLDNLA
GSIKCTPTEQPPSRSWIALQEPDQTRPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWE
YRKKSIMQEIMNCNADIINLQEVETEQYYQYFLPELKEHGYEGFFSPKSRARTMHESDRK
HVDGCAVFYRTEKFGVVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEM
MEESSGKSLHGMEKQLLLVANAHMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSS
VSGETNGIPLVLCADLNSLPDSGVVEYLSQGGVDCTHKDFKDLRYLDSLTNFNCNGKNGN
STSNSRITHGFKLKSAYEDSLMPYTNYTFDFKGVIDYIFYSKPQINVLGILGPLDSNWLH
ENNISGCPHPHIPSDHFSLFAQLELLLPSTLPQGQANNQVNGIHLPGGRR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgttatcagtggatagatataatgttcagttacttaaaaaactttcccccagtgttaca
gcaggaatgcccaaggaaaaatatgaaccgccagaccccaggcggatgtacactatcatg
tcaactgaggaggcagccaatggaaagaagtcttactgggctgagctggaaatcacaggt
aatgtcaggagcctgagcccatctctgtggactctgacccacctcactgccctacatatc
gctgacaactgtctgtcacgcatcccacccgacattgccaaactacacaacctgttgtac
ctggatctgtcgtccaataagatcaggagcctgccggcagagctcggccacatggtgtgt
ctcagggagctgcttttaaataacaaccagttgcgggttctgccattcgaattggggaaa
ctgtttcagttacaaacactggggttgaaaggaaatccacttgcacaagaaatcatgagc
ctgtaccaggagcatgatggcacgaggaaactgttgaactacctgttggacaatctggca
ggttcaatcaaatgcacccccacagagcagcccccgtcacggtcgtggatcgcactccag
gagccggaccagacgagaccttctgcgttgttctcagtgatgtgctacaatgtgctgtgt
gataagtacgccacgcgccagctctatggctactgcccttcctgggccctcaattgggag
tacaggaagaagtccatcatgcaggagatcatgaactgcaacgctgatatcatcaaccta
caggaagtggagacggagcagtactaccagtatttcctgccagagctgaaggagcacggc
tacgagggcttcttcagcccaaagtctcgagccagaaccatgcacgagtcggaccgcaaa
catgtggacgggtgtgcagttttctacaggacagaaaagttcggtgtggtgcagaaacac
acggtagagtttaaccagctggccatggcaaactctgaaggctctgaggccatgctcaac
agggttatgaccaaggacaacatcggagtggccgtactgctggaggtccgcaaggaaatg
atggaggaatcctcggggaagtctctgcatggcatggagaaacagctcctcctggtggct
aacgcccacatgcactgggacccggagtactccgacgtcaagctggtccagaccatgatg
ttcctgtctgaggtgaagaacattgtggacaaggccactcgcagcctcaaactctcctct
gtctctggggagaccaatggcatccctcttgttctctgtgccgacctcaactctctacca
gactctggtgtggtggagtacctgagtcagggtggagtggactgcacccacaaggacttc
aaggatcttcgctaccttgacagcctcaccaacttcaactgcaatggcaagaacggcaac
tccacgtccaactccaggatcacccacggcttcaagctgaagagcgcctacgaggacagc
ctgatgccttacaccaactacacctttgacttcaagggtgtgattgactacatcttctac
tccaagcctcagatcaatgtgctcggcatcctgggtcccctggactccaactggctccat
gagaacaatatcagcggctgcccgcacccccacatcccctctgaccacttctccctgttc
gcccagctggagctgctgctgcccagcactctgcctcagggccaggccaacaaccaggtc
aacggcatccacctgcctggaggacgcaggtag
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