Salvelinus fontinalis (brook trout): 129858009
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Entry
129858009 CDS
T11136
Name
(RefSeq) cleavage stimulation factor subunit 2-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129858009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129858009
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129858009
U7-dependent histone pre-mRNA processing factors
129858009
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Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
129858009
NCBI-ProteinID:
XP_055782823
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Position
6:49403158..49434060
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AA seq
611 aa
AA seq
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MVLHFKVEHFLLLHLSFPKMANLAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKD
IFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS
EKNKEELKSLGTGAPIIESPYGDNIIPDEAPESISRAVASLPPEQMFELMKQMKLCVQNS
PQEARNMLLQNPQLAFALLQAQVVMRIVDPEIALKMLHRQIPVQPLVPNSQAGPVPVANQ
PIPPPNAPVSQSQPMPGMHMNGAPQMMQPPPIGGGPGPMPGQGLVGPPGGIQPPIGMPQG
GPVPIDRGQGNLQHSPVGSSGQAAIERPQGPGGIPPRGLLGDGPNDPRGGTLLSVTGEVI
EPSRGGGFIGAPPPHQGPPIHMNQMVGGHPPDMRPPHDMRGPPMGEPRGMMGEPRGPPMG
EPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRVMMGEPRGPPMG
EPRGMMGEPRGPPMMEPRGPPMETRGRDPRAVDTRGPVSGQRVPMAQGMQAPPHSMNPNA
PTTARPGPGVPQSGGSFSPGQSQVTSQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILIL
KEQIQKTAGAP
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgttacactttaaagttgaacatttcctgttgttacacttgtcattccctaaaatg
gcgaatttagcagctgctgttgttgctgccgctggtagagatcccgctgttgaccgttca
ttgcgctctgtttttgtgggaaacattccatatgaggctacagaggagcaactaaaagac
attttttcagaagtcgggcttgttgtcagttttaggttagtgtatgatagggagacaggc
aagccaaaaggatatggcttctgtgagtatcaagaccaggagacggccctcagtgccatg
cggaacctgaacggaagagagttcagcggccgagctctccgtgtcgacaatgctgctagt
gagaagaataaagaagagctcaagagtttggggacgggggcccctatcattgaatccccc
tacggggacaacataataccagatgaggctccagagtctataagcagagctgtggccagt
ctgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaaaatagt
ccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgccttgctccag
gcccaggtggtcatgaggatcgtagaccctgagatcgccttgaaaatgcttcaccgtcaa
atcccagtgcagccattggttcccaacagtcaagctggaccagtgccggtggccaaccag
cctattccaccgcccaatgctccagtctcccagtcacagccaatgccgggcatgcacatg
aacggagccccccagatgatgcagccccctcccataggtggaggacctgggcccatgcca
gggcagggactggtgggaccaccaggtgggatacagccaccgataggaatgcctcaggga
ggtcccgttcctatcgataggggacaaggaaacctccagcactctcccgtaggatcgtct
gggcaagctgctatcgagcggcctcaaggaccaggtggtatcccccccagaggcctgctt
ggcgacggccccaacgacccccgaggaggaaccctgctctcagtcacaggagaggtcatc
gaacccagtcgtggaggaggcttcattggcgcccccccaccacaccaggggccccccata
cacatgaaccagatggttggcgggcatcctccggacatgaggccgcctcacgacatgaga
ggaccccccatgggtgaacccagaggcatgatgggagagccccggggaccccccatgggt
gaacccagaggcatgatgggagagccccggggaccccccatgggtgaacccagaggcatg
atgggagagccccggggaccccccatgggtgaacccagaggcatgatgggagagccccgg
ggaccccccatgggtgaacccagagtcatgatgggagagccccggggaccccccatgggt
gaacccagaggcatgatgggagagccccggggaccacccatgatggagcccaggggaccc
cccatggagacgagaggtcgtgaccccagagcggtggacacccgtggaccagtgtcaggc
cagagggttcccatggcccaaggaatgcaggcccccccccactccatgaatcctaatgcc
cctacaactgccagaccgggtcctggtgtaccacagtccggaggtagcttcagcccaggg
caaagccaggtgacctcacaggaccatgagaaggctgccttgatcatgcaggtgctgcag
ctgaccccagaacagattgctatgctgcccccagagcagaggcagagcatcctcatcctc
aaagagcagatccagaagaccgccggggcgccctaa
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