Salvelinus fontinalis (brook trout): 129858322
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Entry
129858322 CDS
T11136
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
129858322
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfon01009
]
129858322
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129858322
Protein phosphatases and associated proteins [BR:
sfon01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129858322
Cell adhesion molecules [BR:
sfon04515
]
Cadherins
Protocadherins
129858322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
PDGLE
Syndecan
Fibulin_C
NnrU
Motif
Other DBs
NCBI-GeneID:
129858322
NCBI-ProteinID:
XP_055783448
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All DBs
Position
6:complement(67369622..67743659)
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AA seq
1215 aa
AA seq
DB search
MLCQSSGVMALRWDATLVLAAVLLVCCGADPTDILYRMLEEQPPNTLIGSLASDEGLPDS
GHLYKLEVGTPFLRVDGKTGDIYTTDVPIDRETLRDCRNLLEGDKCFLEFEVSITDLKQG
QGPRLIEGRIEVQDVNDNTPQFTSPILMLSIPENTHIGALFSIPMASDKDSGHNGVAEYS
LSAGPDADQLFSLQVAEDTDEKQPQLIVMGNLDREQKDSYDLNIRVVDGGTPPRASSALL
RVTVTDQNDNAPKFERSHYEAELAENSPVGHSVLQVKANDADMGTNGEIDYSLHQASDAV
QRLLRIDRSTGIIYVKGLVDREEESFLKFFVVAKDRGPNSKNSKVLVTINVRDQNDNAPA
IEIRGIGLVTHHDGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPAS
ESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNAPVF
SPTLFEVDFAEENQPGDKVLDVVATDADSGSNAELTYSIIMDSATKGLFEIDPKTGEVHV
RNTLDREHREQYEFHVAAADKGSPSLRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMP
PLSPVGMVTVIDADKGENARVQLSVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLK
AVDAGDPPRSSYVGVTINVLDENDNSPYVTKPSNSSYKYLPPLTTPETRVEVVEAEDIDT
GPNAELVFSITGGNPYGLFHISPNNGEITLAQEFTRKHNGLHRLVVKVSDKGKPPRHTTA
LVHIFVNETMGNITLIESLVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILV
IVVVVVIRHRMQKDTKSGYQAGKKESKDLYAPKAGPKNGKGKKSKKGKVPKPTKPLEEDE
EASLQKGLNFNLINDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASK
KHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSNKQLPHRRVTFSTANQAQD
LQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLR
PLPDVAMTGNCTHECTEFGHSDACWMPGQPSPNRKSSTKNAPKLSTFVPYLESEGQDHLM
ANGSPKPMAEERGSGGGGSGGSKVANIRFLPPYSSAFSGGSDSGKGCEEIPLSQAAEYHS
ATTPTNQGSKREIYL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgccagtcaagcggagtgatggcgctgaggtgggatgccacgctggtgttggcc
gccgtgcttctggtttgctgtggtgccgatcccactgacattctctaccggatgctcgag
gagcagccgcccaacacgttgattggcagcctggcatcggacgagggcctgcccgactca
ggccacctctacaagctggaggtgggcacccctttcctgcgcgtggacggcaagacggga
gacatttacaccacagatgtccccatcgaccgtgagacactgcgggactgccgcaacctg
ctcgagggcgacaagtgcttcctggagttcgaggtgtctatcacggacctgaagcagggc
cagggaccgcggctgatcgagggtcgcatcgaggtgcaggatgtcaatgacaacacaccc
cagttcacctcgcccatcctcatgctgtccatcccagagaacacacacatcggggcactc
ttctccatccccatggccagcgacaaggactcgggccacaacggcgtggccgagtactcg
cttagcgccgggcctgacgccgaccagctcttcagcctgcaggtggccgaggacacagac
gagaagcagccacagctcatcgtcatgggcaacctggaccgcgagcagaaagactcgtac
gatctcaacatccgtgtggtggacgggggcacaccaccgcgagccagcagcgccctgctg
agggtgaccgtcaccgaccagaacgacaacgcacccaagtttgagaggagccactatgag
gctgagctggctgagaacagccctgtgggacactcagtcttgcaggtgaaagccaacgac
gctgacatgggtaccaacggggagatcgactatagcctgcaccaggcctccgatgccgtc
cagaggttgctacgcattgaccgctccacagggatcatctacgtcaaggggctggtggac
cgcgaggaggagagcttcctcaagttctttgtggtggccaaggaccgtggacccaactcc
aagaactccaaagtcctggtgaccatcaacgtcagggaccagaacgataacgcacccgcc
attgagattcgtggcatcggcctggtcacccaccacgacggcgtggccaacatctcagag
gacatgcccatcggcacgcctgtagccctggtgcaggtgtcggatcgagatgaaggggag
aatgctgtggtcacctgtgtggtggccggggacgtccccttccagctgcggcccgccagc
gagtcagccaacgaccgcaagaggaaatacttcctgcagaccacgaccctgctagactac
gagcgcatcaaggactacaggattgaaatagtagcggtggactccggtaaccctgcactg
tccagcacaaactccctgaaggtgcaagtcactgacatgaatgacaatgcccctgtcttc
tcccccaccctgtttgaggtggactttgcagaggagaatcagccaggtgataaggtcctg
gatgtggtggccacggacgcggacagcgggtccaacgcagagctgacctacagcatcatc
atggactcggccactaaggggctctttgagatcgaccccaaaacgggagaggtgcacgtg
agaaatacgctggaccgtgagcacagggagcagtacgagttccacgtggcggcggccgat
aagggctcgcctagcctgagggggacggccacggtggtggtcaaggtgctggaccgtaac
gacaacgaccccaagttcatgttgagcggctacagcttctccgtcttggagaacatgcct
ccgctcagccctgttggcatggtgactgtcatcgacgcagataagggcgagaacgccagg
gtgcaactctcggtggagcccgacaatggcaagtttgtcatccagaatggcacaggcact
atcctctccagcatatcctttgaccgtgagaaggagagcacatacactttccgcctcaag
gctgtggatgccggtgaccctcccaggtcctcctacgtgggtgtgaccatcaacgtcttg
gacgagaacgataactccccctatgtcaccaagccctccaactcctcctacaagtacctc
ccacctctcacgacccccgagacacgcgtggaagtggtggaggccgaagacatcgacact
ggacccaacgccgagctggtcttcagcattaccggcgggaacccctacggactgtttcac
atctcgcccaacaatggggagatcaccctggcccaggagttcacccgcaagcacaacggg
ctccaccgtctggtggttaaggtgagcgacaaaggcaagccaccacgccacaccaccgcc
ctggtccacatcttcgtcaacgagaccatgggcaacatcaccctgatcgagtctctggtg
ggtcacagcctctacactcctctggacagagacattgccggggaccccaactacgcgctg
gcccagcgcagcaacatcctgtacggcagcctagcgggcatcgccggagtcatcctggtc
atcgtggtggtggtggtgatccgccatcgcatgcagaaggacaccaagagcggctaccag
gcaggcaagaaggagagcaaggacctgtacgcccccaaagcagggcccaagaatggcaag
ggcaaaaagagcaagaagggtaaggtgcccaagcccaccaagccactggaggaggacgaa
gaggccagcctccagaagggcctcaacttcaacctcataaacgatagtgtcaatgacagt
ccccggatccacctgcccctcaactaccccccgggcagccccgacctgggcagacactac
cgctccaactccccactgccctccatccagctgcagccccagtccccctctgcctccaag
aagcaccaagccgttcaggacctgcccgccaccaacacctttgtgggcacaggtgacaac
aactctacaggctccgatcaatattcggattacagctacaaggcaaacccgccgaaatac
agcaacaaacagctcccccatcgccgagtgaccttctccacggccaatcaggctcaagac
ctgcaggacccctcccagcacagctactacgacagcggattggaggaatcggagactccc
agctccaaatcgtcatcggggccccgcattgggcccctggccctgcctgaggaccactac
gagaggaccaccccagacggcagtatcggagagatggagcacccggagaacgatctcagg
cctctgcctgatgtggccatgactgggaactgcacccatgagtgtaccgagtttggccac
tccgacgcctgctggatgcctggccagccctcccccaatcgtaagagctccaccaagaac
gcccccaagctctccaccttcgtgccttacctggagagtgaggggcaggaccacctcatg
gccaacggcagccccaagcccatggcagaagagcgtgggagtggtggaggtggcagcgga
ggctccaaggtggctaacatccgcttcctgcccccttacagcagtgccttctccgggggc
agcgactccggcaaaggctgcgaggagatccccctgagccaggcagccgagtaccactcc
gccaccacacccaccaaccagggctccaagagagagatttacctgtga
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