Salvelinus fontinalis (brook trout): 129859290
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Entry
129859290 CDS
T11136
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129859290
09123 Folding, sorting and degradation
03018 RNA degradation
129859290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129859290
03041 Spliceosome [BR:
sfon03041
]
129859290
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129859290
mRNA degradation factors
5'-3' decay
Lsm complex
129859290
Spliceosome [BR:
sfon03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129859290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
129859290
NCBI-ProteinID:
XP_055784856
LinkDB
All DBs
Position
7:25634742..25640183
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AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccccagctacaaatccatcacagttgctcccacttgagctcgtggacaaa
tgtataggttcccgaatccatattgtcatgaaaaacgacaaagaaattgtcggcaccctg
ttgggtttcgatgattttgtcaacatggtgttggaggacgtgaccgaatttgaaatcaca
ccagagggaagaaggataaccaaactggaccagatcctactcaacggcaacaacatcacc
atgctcatacctggaggcgaagggcctgaagtatga
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