Salvelinus fontinalis (brook trout): 129860436
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Entry
129860436 CDS
T11136
Name
(RefSeq) ubiquitin conjugation factor E4 B-like isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04120
Ubiquitin mediated proteolysis
sfon04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129860436
04120 Ubiquitin mediated proteolysis
129860436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfon04121
]
129860436
Enzymes [BR:
sfon01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129860436
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
U-box type E3
129860436
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
129860436
NCBI-ProteinID:
XP_055786796
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Position
8:complement(6317365..6382474)
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AA seq
1178 aa
AA seq
DB search
MELSADEIRRRRLARLAGGQTSQPSTPLTSPQRESPPGPLPGTSGATPQPFPPAASHALG
LNVQSVTPATSPMGASGVVYRSQSSEGVSSLSSSPSNSPETQSLSRSQSMDIDTGSCEKS
SISQVDVDSGIENMEVEDSDRRERRNLAEKESAETSDVSEEQALQLICKILRVSWKEQDR
DVIFLPSLAAEFYQSSPKEVYSDFKDLIGQILMEVLMMSTVSHIHNPFGSLTATSQPIAA
AKSPDHHLTLVQPSSQGGSPMATCAGSFGASSLSSLGVSAGGMDSQSCSDCFSIEACMET
EMLNYLIERFDSAGMEESKAPKICSHPGVSQLLSNIRSQCISHAALVLQGALTQPRSPLQ
QSLLVPYMLCRNLPYGFIQELACMTHQEEVFRQIFVPILQGLALAVKECSFDSDNFKFPL
MALAELCEIKFGKTHPMCNLMTSLSLWCPKSLGPGMGREVQRLSFLGAFFSLSVFAEDDT
KVGDKYFSGPAITMENTRVGSQTLQHYLESARGDLFKILHNILLNGETREVVLNYMAALV
NRNVKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKIKLETVDPYYIFDPRCRLQVSREET
RLKATMEELNTWLAEIHDPSKFYDPKFPTECFFLTLHTHHLSILPGCRRYIRRLRAIREL
NRTVEELKNSESQWKDSPLASRHREMLKRCKTQLKKLVRSKACADAGLLDENLLRRCLQF
YSMVIQLILRMVDPAYPHITLPLNPEIPKSFAALPEFYIEDVAEFLLFVVQYSPQVLYEP
CVQNIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRISEMMENHPLSVKHL
VPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNMGHHGTFLEEFNSGKQFVRY
INMLINDTTFLLDESLESLKRIHEVQEEVKNKEQWDQLPREQQQSRQSQLTQDERVSRSY
LALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGF
EPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMKKAGIKSTITIEKFKL
LSEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPVILPSGNIMDRAIILRHLLNSP
TDPFNRQPLNESMLESLPELKERIQAWMREKQGQGRFL
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagtgccgacgagatccgcaggaggagactggcaagactggcaggaggacaa
acatcccagcccagcactcccctgacgtccccacagagagagtccccccctgggcccctt
cctgggacctcaggggccacaccccagccctttccaccagctgcctcacacgcactggga
ctcaatgtccagagtgtcacccccgccacctctcctatgggcgcctctggtgtggtgtac
cgcagtcagagcagcgagggtgtgagctccctctccagctctccctccaacagcccggag
acccagagtctatccagatctcagagtatggacatcgacactggctcctgtgaaaagagc
agcatatcccaagtggatgtggactcagggatagagaacatggaggtggaggacagtgac
cgcagggagaggaggaacctggctgaaaaggaatccgctgaaacctcagatgtctctgaa
gagcaggctctgcagctcatctgtaagatcctgcgtgtctcctggaaggagcaggacaga
gatgtcatctttctcccctcgcttgccgcagagttctaccagagcagccccaaagaagtc
tactctgacttcaaagacctgattggccagatcctgatggaggttctcatgatgtccacc
gtgtcgcacatccacaaccccttcggcagcctgactgccacgtcccagccaattgctgct
gccaaatctcccgaccaccacctgacgctggttcagccctctagccagggtggcagtccc
atggccacctgtgcaggctcatttggggccagctctctgtccagtctgggtgtgtctgca
gggggaatggactcgcaatcctgcagcgactgcttctccatcgaggcgtgcatggagact
gagatgctcaactacctcatcgagcgcttcgacagtgcaggcatggaggaaagtaaggcg
cccaagatttgcagccaccccggtgtcagccagctcctcagcaacatacgctcacagtgc
atttcccatgccgctcttgtccttcagggcgccctcacgcagcccaggagccccctgcag
cagtccctgctggtgccctacatgctgtgccgaaacctgccgtatggctttatccaggag
ctggcctgcatgacccaccaggaggaggtcttcagacagatcttcgttccaatccttcaa
gggctggctctggctgtgaaagaatgttccttcgacagtgacaactttaagttccccctc
atggctttagctgagctctgtgagatcaagtttgggaagactcaccccatgtgcaatttg
atgacgtctctctccctgtggtgccccaagtctctgggcccggggatgggccgagaggtt
cagagactgtccttcctgggagcattcttcagcctgtctgtctttgcagaggatgacacc
aaagtgggtgacaagtacttctcgggcccagccatcaccatggagaacactcgcgtgggt
agccaaaccctgcagcactacctggagtcagcccggggtgacttgtttaagattctccac
aacatcctactaaatggagagacaagagaggtagtgctcaactacatggcagctctggtc
aaccgcaatgtgaagaaagcccagatgcagacagacgacaagctggtgtccacggacggc
ttcatgattaacttcctgtcggtgctgcaacagctgagcatgaagatcaagctggagacg
gtggacccgtactacattttcgacccccgctgccgcctgcaggtcagccgcgaggagacc
cggctcaaggccaccatggaagagctcaacacctggctggccgagatacatgacccctcc
aagttctatgatcccaagttccccacagagtgtttctttctgacgttgcacacccaccac
ctgtccatcctaccaggctgccgacgctacatccgcaggctgagagccattcgcgagctc
aacaggacggtggaagagctgaagaatagtgagagccagtggaaggactctcccctggcc
agccgacaccgagagatgctgaagagatgcaaaacccagctcaagaaactggtgcgctcc
aaagcctgtgccgatgcgggtcttctggacgagaacctgttacgcagatgtttgcagttc
tacagtatggtcattcagctcatcctacgcatggtcgatcctgcctacccacacataact
ctaccactgaatcccgagatccccaaaagctttgctgctctgccagagttttacattgaa
gatgtggccgagttcctgctttttgttgtgcagtattcccctcaggttctgtacgagccc
tgcgtccagaacattgtcaccttcctggtggtgttcatctgcagtcagaactacatccgg
aacccctacctgatcgccaagctggtggaggttctgtttgtcaccaaccctgctgtgcag
ccgcgcacccagcgcatctctgagatgatggagaaccacccactgtccgtcaaacatttg
gtcccggccctcatgaagttctacactgacgtggagcacaccggtgccaccagcgagttc
tatgacaagtttaccatccgctaccacatcagcaccatcttcaagagcctctggcagaac
atgggccaccatggcactttcctggaagagttcaactccgggaaacagtttgtgcgttac
atcaacatgctgatcaacgacaccaccttcctgctggacgagagcctggagtccctgaag
cgcatccacgaggtccaggaggaggttaaaaacaaggagcagtgggatcagcttcccagg
gagcagcagcagagccgccagtcccagttgacccaggatgagcgggtgtcacgctcttac
ctggccctggctacagagacggtcgacatgttccacatcctcaccaagcaggtccagaag
cccttcctccggcccgagttggggcctcgtctggcggccatgctaaactttaacctacag
cagctatgcgggcccaagtgccgggacctgaaggtggagaacccagagaagtatggtttt
gagcccaagaagctcctagaccagcttactgacatttacctgcaacttgactgtgcccgc
ttcgccaaggccatcgccgacgaccagcggtcatacagccgagagctctttgaggaagtg
atttccaagatgaagaaagccggcatcaagtccaccatcaccattgaaaaattcaagctg
ctatcggagaaggtggaggagatagtcgccaggaactcgcagtccgaaatggactacagt
gacgcacctgacgagtttaaagaccctctgatggacacattaatgactgaccctgtgata
ctgccctctgggaacatcatggaccgagccatcatcctccgccaccttctcaactccccg
actgacccctttaacagacagcctctcaacgaaagcatgctggagtcactccctgaactg
aaggagaggatccaggcatggatgagagagaagcaaggccagggacgtttcctctag
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integrated database retrieval system
