Salvelinus fontinalis (brook trout): 129861155 Help Entry 129861155         CDS       T11136                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism sfon  Salvelinus fontinalis (brook trout) Pathway sfon04510   Focal adhesion sfon04512   ECM-receptor interaction sfon04518   Integrin signaling Brite KEGG Orthology (KO) [BR:sfon00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     129861155    04518 Integrin signaling     129861155  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     129861155  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sfon00536]     129861155 Glycosaminoglycan binding proteins [BR:sfon00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    129861155 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  129861155 NCBI-ProteinID:  XP_055788295 LinkDB All DBs Position 8:complement(34753436..34787043) Genome browser AA seq 1420 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLCIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGSPGPPGPNGPPGLGGNFAAQMAG GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA GAKGEGGAPGENGTPGPMGPRGLPGERGRPGPSGTAGARGNDGLPGPAGPPGPAGPAGAP GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPQGGPGPA GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP GPKGANGESGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGTQGLQGPRGLPGTP GSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV GSPGPNGNPGAAGPAGPAGKDGPKGVRGDSGTPGRQGEAGLRGAAGAPGEKGDAGEDGLP GPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGSAGPPGNP GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLTQHDVEVDSTLKSLNNQ IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY PSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ NLTYHCKNSVAYMDASTGNLKKGLLLQGSNDVEIRAEGNSRFTYSVVEDGCKKHTGQWGK TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4263 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaagttgtttta ctatgcattgtcagatgtcaggaagaggatgaccacgtggcgattggtgctaagggccag aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg ggcccctcaggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat gttggccccagaggcagagatggcgagcctggcacccccgggaaccccggaagccctggc ccccccggacctaacggacctccaggccttggcgggaactttgctgctcagatggctggt ggattcgacgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct atgggtccccgtggtccacctggcccttctggagcccctggcccacaaggtttccaaggt aaccccggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct ggagccaaaggtgagggtggtgctcccggagagaacggcacgcctggaccaatgggacca cgtggtctgcctggcgagagaggccgtcccggaccttctggaactgctggtgcccgaggt aatgatggcttgcctggccctgctggtcctcccggccctgctgggcctgctggagcaccc ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact gagggcgcacagggaccccgtggggaggctggtacacccggatctcctggacccgctggt gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggcgcttct ggaattgctggtgcacctggtttccccgggccccgtggcccccccggacctcagggagca acaggacctcttggacccaagggacagtctggagaccctggtattcctggcttcaaagga gaggctggtcccaagggagagcttggccctataggtccccaaggtggccctggccccgct ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgctggt tctaagggagcccctggtgaccgtggtgttcccggtgtgggtgggcctaagggaggcact ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc cccggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggacggt cgccccggcccacctggtcctcagggagcccgtggccagcctggtgtgatgggattcccc ggaccaaagggagccaatggtgagtctggcaaagcaggagagaagggtcttgtgggtcgg caaggtctgataggtctggctggtaaagatggtgagactggtgctgctggacctctcggc cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag ggtctgcccggacctgccggccccccaggagagggaggcaagcctggtgatgcgggtgtt cctggagaggctggtgctgctggtgctactggacccagaggcgagcgtggtttccctggt gagagaggcggtgctggaactcagggtctgcagggacctcgtggacttcctggaactccc ggaagtgatggaccgaagggagccattggcccagctggtggtgctggagctcaaggaccc ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt gacagaggtgacaatggagagaaaggacctgagggagcttctggaaaagatggttctaga ggtttgactggtcccattggtcctcctggcccagctggtcccaacggcataaagggtgag ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt gagggtggtcctcccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcacatggacct caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa gacggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagaagctggg ctgcgtggagctgctggagcccctggcgagaagggagatgctggagaggatggtctccct ggtcctgatggtccttcaggtccccagggtctggctgggtcacgtggtattgttggtctg cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt aagcagggagctcctggtgctggtggtgatcgtggaccccctgggcctgtggggcctcct ggactgtctggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt gcacctggtgcccctggcgctcccggtgcccccggccctgttggccctctgggcaagcag ggagacagaggagagggaggtgctcaaggacctgccggacccgctggaccagctggcgct agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca ggctccgctggagaccagggagctgctggacctgccggacctagtggtgctaagggaccc cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga ccccctggacctcgtggtcgttctggagaaactggctctgctggtccacctggtaacccc ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc ctgtctcagcctgagaagtctccggatcccctgaggtacatgagagctgatgaggcgtcc agctccctgacgcagcacgacgtggaggtggactccacactcaagtctctcaacaaccag atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaaggaccgcaaa cacgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggatggt accaacgctgccagtatccagctgaccttcctgaggctgctgtccacagaagcatctcag aacctcacttaccattgcaagaacagcgtggcctacatggacgcatccaccggcaacctg aagaagggtctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc cgcttcacctacagcgttgtggaggatggctgcaagaaacacacaggccagtggggaaag actgtctttgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc atggacattggaggagcagaccaggagttcggtgtggatgtgggcgcagtctgcttcttg taa

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