Salvelinus fontinalis (brook trout): 129861214
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Entry
129861214 CDS
T11136
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129861214 (ddx20)
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129861214 (ddx20)
Spliceosome [BR:
sfon03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
129861214 (ddx20)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
HypF_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
129861214
NCBI-ProteinID:
XP_055788402
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Position
8:37693353..37700190
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AA seq
835 aa
AA seq
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MASSMKKAAHDIETRKRTDDVVLSGGIDFNALLLSQPVLDGLAASGFKKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSAIALDSLVMENTTTQVLVLAPTREIAVQIHSVVMAIGS
AMEGLQCHVFIGGTPVSQDKISLKKCHIAVGSPGRIKQLIELGLLVTASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLAHYMREPTFVRLNPSDPGLIG
LKQYYRLVHSHAMPHKVFEEKVLLLLELFSKVPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGSLSQDQRMEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTHGLAVTYCCHGEEENKMMAIAQKCNLILCALPDPIEPGLMQEPCDWDITV
EALTPGTNSQVFPKTERRRRAKTEAPAPKPIRDEDQDPSPVHPESTEPSRPCKSQHTARP
GAKAGPKPKNASPALDVLLPPPKASVVPGASLALSRKEQQDALPKIPPLSAFKSRRSGIM
TFQEAELDFQSFIREGLGRTVEVIRQFRGHGDDGDGFNGQRGYEESHTLQNDDVPLTRTH
MTRNGERPPTPTQLPLKTNSDPSPLESTSDGSSSDSDIEEDRQADESTQSSTDQTRGAEH
KPIIPIQAQSAQQFTDMDGARKPKFAPPRSQSNSPSVPHPSHHISPRPEGRAVSTNPGDG
EPLLWKAKGREATTQQWSRETAKKVKGEKRDILEERKVPENRASESKRDRVSEVVEEDGE
GYEGYWRAYYRAWEDYYASMPPSHHQGYHDYHSMASSWMAAYRMNSVYMEELLKH
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcaatgaagaaggctgcccacgatattgaaacgcgaaaacggactgatgat
gttgtcttgtcgggcggtatcgacttcaacgccctgttgttgtcgcagcccgtgctcgat
ggactggcggcttctggattcaagaaaccgtctccaatccagctcaaagccattccgttg
gggcgatgcggactcgatctgatagtgcaggccaagtctggcacagggaagacctgtgtg
ttctctgccatcgccctggactctctggtaatggagaacactacgacacaggtgctggtg
ctagccccaacccgtgagatagcagtgcagatccactctgtggtgatggctataggcagt
gccatggagggcctgcagtgtcatgtcttcattggggggacacccgtcagccaggacaag
atcagtctcaagaagtgccacatcgctgtgggatcaccaggacgtatcaagcagctgatt
gagctgggtcttttggttaccgccagcatccgtctgtttgtgctggacgaggctgacaaa
ctactggaggaaggcagcttccaggaccagatcaattggatattctcctctctaccggtc
aacaaacagatgttggccctgtctgccacctacccagaatcccttgcccagcacctggcc
cactacatgagagagcccaccttcgtcagacttaacccctccgaccccggactcataggt
ttgaagcagtactacaggctggtgcactcccatgccatgccccataaggtgtttgaggag
aaggttctgctcctgctggagctgttcagtaaagttcccttcaatcaagctctggtgttc
tccaacctgcacaccagggctcagcatttagcagacatcctgtcctcgaagggccttcct
gctgtctgtatctcaggtagtctgagtcaggaccagcgaatggaggccatgtctaaactg
aaacagtaccagtgcagagtactcatctctactgacctgacctccaggggtatagatgct
gagaaggtgaatctggtgatcaacctggatgttcctcaggactgggagacctacatgcac
cgtataggacgagccggacgctttggtacacatgggctggcggtgacctactgttgccat
ggcgaggaggagaacaagatgatggccattgctcagaagtgcaacctgattctttgcgct
ctaccagaccccatagagccagggctgatgcaggagccctgtgactgggatatcactgtg
gaggccctgacaccagggactaattcccaggtgttccccaagacagagaggaggagacgg
gctaagaccgaagccccagctcctaaacccatcagggacgaggatcaggaccccagccct
gtccacccagagagcactgaacccagccgaccatgtaagagccagcacacagccaggcct
ggggctaaggctgggccgaagcccaaaaatgcatcccctgccctggatgtcctcctaccc
cctcccaaggcttcagtagtccctggggcctccctagctctctctcgtaaagagcaacag
gatgccctgccaaagatccctccgctcagcgccttcaagagtcgaaggtcagggatcatg
accttccaggaggcagagctggacttccagagcttcatcagggaagggctgggaaggacg
gtggaggtcatccgacagttcagaggtcacggagacgacggcgacggatttaacggtcag
cgcggctacgaggagtctcacacactccagaatgacgatgtgccactcacacgcacacac
atgacacggaacggagagcgtccaccaacacccacacagctgcctctaaagacgaactct
gacccgtcacctttggagtcgacttctgatgggtccagctctgactcggacatagaggaa
gaccggcaagctgacgagtcaacgcagagctccacagatcagaccagaggagctgaacac
aaaccaatcattccgattcaagctcaatctgcacagcaattcacagacatggatggggcc
aggaaaccaaagtttgcgccacctagaagccaatccaactcaccgtctgtaccccatcct
agccaccacatatcccccagaccagaggggagagctgtgagtacaaaccccggggatggt
gaacctttgttgtggaaggcaaagggcagagaggctacaacacagcagtggagtagggag
acggctaagaaagtcaaaggggagaagagagatattttagaggagaggaaggtgcctgag
aatcgtgcgagtgagagcaagagggacagagtgagtgaggtagtggaggaggatggtgag
ggttatgagggctactggagggcctactacagagcttgggaggattactacgcctccatg
cccccctctcaccaccaaggttaccatgactaccacagtatggcgtccagctggatggct
gcctaccgtatgaactctgtgtacatggaggaactgttaaaacactga
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