Salvelinus fontinalis (brook trout): 129862500
Help
Entry
129862500 CDS
T11136
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129862500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129862500
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129862500
mRNA degradation factors
5'-3' decay
Decapping complex
129862500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
Beta-prop_WDR3_2nd
Pdc1_Ge1
Beta-prop_WDR36-Utp21_2nd
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
129862500
NCBI-ProteinID:
XP_055790210
LinkDB
All DBs
Position
9:complement(36312940..36369062)
Genome browser
AA seq
1417 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSKTSFNGELNGLLGTDLIGAGDR
STMAESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVIVHVRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGPMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSNSNNGFGFSDHLTDMSVEVLSSDKESGCGSENDLCKIPALADFLSPSGTAAMPKLM
TPDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGARGGEELTQSPKMSVESNSILISG
LGDNMPMYHLPQETTPHTLMFPLTYPLRPLQGLPSSNPPLSLDPQVIEPMLIQQASPTRA
RSPDVISSASTAMSQDIPEIASETLQRGLGGMSGAESRETLPALHTDSMASAASALHLLP
PRNRNSSDHGHLPLELGAVVEAEQRLSNTPSLLENALSQENAAAAAAASCSDNNVSHPWP
AAPDITRETRNSLRDNGLGDCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDE
VASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEQHHQQ
MNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHE
QRRMERILAEGHSRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPTITKSLEP
VTAQMSNTIAAKLTAVEAALKENISKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGI
VLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQLQQMIDTF
QNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQQAAVNSS
IMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYVCETID
SQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSAV
LSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccgggaacagcgttgatgcttctccaagtgagaaccaaagcaaaaca
tctttcaatggtgaattgaatggacttctgggaacagaccttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacactcaagagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatccaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagtaaggcacgtggcagcaacaaggta
aaaatccagcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcagtctctaatgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctgttgaagggcttcactggtgcagtc
acagacctggccttcgcacacctggactccaccctgctgggatgtgttgacgaggccggt
aacctggtcatctggcagctcacctgccatagcagcaagatccaggatcaagtcattgtc
cacgtccggaggcctgaggacacacctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccttactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatagcacctgg
ccagtagatgccactgacctgaaggacggagttataaccataaaaggacatacagatcgt
atcagtgaaggtgccctgtctccggatggcacagtcttagccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattttggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
ttcctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccaccagacgaggagagcgagagtatgactgcagatggcaac
cagggaccaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctcatccttgttc
ctgcctcactcgaactcaaataatggctttggtttttcagatcacttgacagacatgagt
gtggaagttttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaag
attccagctcttgctgacttcctgtccccctccggcactgctgctatgcccaagctcatg
acccctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgcc
agcagcctgaccatagtgacagccatgagcagcaactctgacagtggcgccaggggagga
gaggagctgacccagagccctaagatgtctgtggaaagcaactccatcctcatctcaggc
ttaggggacaacatgccgatgtaccatcttccacaagagaccactcctcatacgctcatg
ttccccctcacctaccccctccgccctctacaggggcttccctcttcaaacccgcccctc
tcgctggacccgcaggtcattgagcctatgctgattcagcaggcctctcctacccgggcc
cgctctcccgacgtcatctcatctgcctccacggccatgtctcaggacattcctgagatc
gcctctgagacgctgcagcgaggcctaggagggatgtctggagctgaatctcgagaaact
ctcccagccctccacacagacagcatggcttctgcagcctcagctcttcacctcctccct
ccacgaaaccggaacagctctgaccatggccacctgcccctggagctgggtgctgtagtg
gaggctgaacagaggctcagtaacaccccctcactactggagaacgccctgtcacaggag
aatgctgctgcagccgccgctgcctcctgctcagacaacaatgtgagccacccgtggcct
gcagctcctgacatcacacgggaaacacgcaacagcctgcgagacaatggcctgggagac
tgctcgagggaggaaattaaggacagacacatgtcctctccataccacagacgcacctac
cacttaacccagaatgacagtcaggacgccagtgcagaacagagtgaccatgacgatgag
gtggccagtctagagtcgtcttcagggaactgtggagccaggtcgtctcaaagactgcca
gtgaaggagtggaagagttctcccagaggctcccctaaactaaagaggaagagtaaaaaa
gatgacggggatgcatctcatgcctctcagtccaggcagcctgagcagcatcatcagcag
atgaacccagaggtgctggaagagcttctgattttgctccgtaaccagcagagggagata
gcggagctccatcagagtcagctggagctgcttcagagagtgacgggccacatggatgcc
gtgcagagctctgtcatagcccacgtagagcacgtcatggtcagccagcaggagcacgaa
cagaggagaatggagagaatcttagcagagggacacagccgtaaccagcagctccaggag
catctctcgcagcagctgggtcaaactctcagtaacaccctttgtaatcgtctggacaag
actctccgagaggagatgaagaagactgttcctcccactatcaccaagagcctggagcct
gtcactgcccagatgagtaacaccattgctgctaagctgactgctgtggaggcagcactg
aaggagaacattagcaaagttgtgaagtcaaagaacaccacagatgctattggccgtgca
gctgccgaggcaatgcaggggcctatccaggctgcctacaaggatgctttccagggcatt
gtgctgcctgtgtttgagaggggctgccagtctatgttccagcagatcaatgagagcttt
aagcagggcacccatgagtatatccagcaactggagacccatgtgaagaacaagaagcag
catgagcaggaagcacgggatcctatgattggccagctgcaacagatgattgacactttc
cagaactcaacggatcagctggccaccaccatcacagcaagtgtccgctctgaggtccag
catcagctccacatgacggtgggaaacttgcaggactcgatcctgacccaggtgcagcgc
attgtgaagggtgaggtgagtatggccatgaaggagcagcaggcagctgtgaactccagc
atcatgcaggccatgcgctctgctgcaggcacgcctgtccccaccgcacacctggactac
caggcccagcaagccagcatcctgcagctgctgcagcagggacagctcaaccaggccttc
caacaggccctgtctgcctctgacctgaacctggttctgtatgtgtgcgagaccatcgac
tcccagcaggtgtttggccagcatccctgccccctcatccagccagtgctgctgtccctc
atacagcagctgtccactaacctggccacacgctctgagctcaagatcagttacttggag
gatgctgtgatgaacctggaccatggtgatccggtgacgagggaccacatgagtgcggtg
ctgtcccaggtccgacagaagctgttccagttcctgcagtcagacccacacagtcctctc
agcaagagagcccggcgcctggtgatgatgcttcagggcctggtcaatcactag
DBGET
integrated database retrieval system
