Salvelinus fontinalis (brook trout): 129862805
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Entry
129862805 CDS
T11136
Name
(RefSeq) thrombospondin-2-like isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04145
Phagosome
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
sfon04518
Integrin signaling
sfon04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129862805
04518 Integrin signaling
129862805
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
129862805
09144 Cellular community - eukaryotes
04510 Focal adhesion
129862805
09142 Cell motility
04820 Cytoskeleton in muscle cells
129862805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfon04131
]
129862805
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129862805
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129862805
Membrane trafficking [BR:
sfon04131
]
Endocytosis
Phagocytosis
Opsonins
129862805
Exosome [BR:
sfon04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129862805
Exosomal proteins of colorectal cancer cells
129862805
Exosomal proteins of bladder cancer cells
129862805
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129862805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
TSP1_CFP_C
EGF_3
TSP1_CCN
TSP1_ADAMTS
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
129862805
NCBI-ProteinID:
XP_055790777
LinkDB
All DBs
Position
1:complement(82326749..82371897)
Genome browser
AA seq
1190 aa
AA seq
DB search
MILRSLNLLPILLLCSSALPQDGEVTSDDDTTFDLFDISGITRKTLGAKQFRGQDTDNPA
YRFIRFDHLPSVSAPVLKQMLQQIQNNEGFVFVASMRQDRGSRGTLIALDGANGQRQFEI
VSNGRANTLDLVYWVDGSQNVVSFEDVDLSDSQWKNITLHVHGENANLFVGCSLIDSFIL
DEPFYEHLQAEGNRMFVAKGSIRENHFRGLLQNVRFLFDTSVDDVLRNKGCEVTKPEDTN
TVVSESTDMVDVSSSTAITTNFIGQKTENLGADMCERSCEELSTMFQELKGLRVVVGNLI
DGLQKVTEENTVMKDTLGKIKNSKEKHMCWQDGRMFEDKEDWVVDSCTTCTCQDSKIVCH
QITCPPVACASPSFLDGECCPVCLPMDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDATS
NPCSGPSIQTRKCSLGKCDSRVRQDGRWSLWSPWSSCSVTCGEGQITRIRHCNAPTPQLG
GKDCDGQGRVTQRCEAKPCPIDGGWGPWSPWAICSATCGGGVKGRTRVCNSPEPQYGGQK
CPGETNDSNACNKQDCPIDGCLSNPCFGGVDCNSGSDGSWECGPCPLGFRGNGTHCDDVN
ECDIVSDVCFKAGGALRCVNTDPGFHCLACPPRYKGTQPFGVGVEAASKNKQVCEPENPC
KDKTHNCHRSAECIYLSHFSDPMYKCECRIGYAGDGFICGEDSDLDGWPNQNLVCGANAT
YHCRKDNCPNLPNSGQEDFDKDGQGDACDKDDDNDAIVDERDNCPLLYNPRQFDFDKDDV
GDRCDNCPYEHNPAQIDTDHNGEGDACAVDIDGDEIPNEQDNCPYVYNNDQKDTDMDRVG
DQCDNCPLLHNPDQADTDNDLVGDQCDNNQDIDEDGHQNNLDNCPYVANSNQADHDKDGK
GDACDFDDDNDGIPDDRDNCRLTPNKDQLDTDGDGRGDACKDDFDNDNIPDILDVCPENN
AVSVTNFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTVNSDPGIAVGFDEFNAVDFSG
TFYVNTDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNSTT
GTGENLRNALWHTGNTKDQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQ
ILADSGPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDELEFPTVLSIR
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgatactcagaagtctcaacttgctgccgattttattactttgctcctcagcgctacct
caagatggcgaggtcacatcggatgacgacacaacatttgacctgtttgatattagcggt
atcacacgcaagactctgggcgccaagcaattccgcggccaagacacagacaaccctgct
taccgcttcatccgcttcgaccatttgccctcagtgagcgcgcccgtgctcaaacagatg
cttcagcaaatccagaacaatgagggcttcgtgttcgtggccagcatgcgccaggaccgc
ggatcgcggggaaccctcatcgcattggatggcgccaacggccagcggcagtttgaaata
gtctccaacggccgcgccaacacactggaccttgtctactgggtggacggctcccaaaat
gttgtctccttcgaggatgttgacctgtccgactcgcagtggaagaatatcacacttcat
gttcatggcgaaaacgcaaatctgtttgtgggctgcagtctcatcgacagcttcatcttg
gatgagccgttctacgagcacctgcaggcggaggggaaccgaatgttcgtcgctaaggga
tccatccgtgaaaaccacttcagggggttactgcagaacgttcgcttcttgttcgacaca
tccgtggatgacgttcttaggaacaagggctgtgaagtcactaagccagaagacaccaac
acggtggtgagtgagagcacagacatggtggatgtgagttcctccaccgccatcaccact
aacttcattggccagaagacagagaatctgggagcagatatgtgtgaacgatcctgtgag
gaactcagcaccatgttccaggagctcaaaggactgcgggttgtagtggggaacctcatt
gacggcctgcagaaagtgaccgaggagaacacagtgatgaaggacactctgggaaagata
aagaactccaaggagaaacacatgtgctggcaggatggacggatgtttgaagataaggag
gactgggtggtggacagctgcaccacgtgtacctgccaggactcaaagatcgtgtgtcac
caaatcacctgtcctcctgtagcctgtgctagcccctccttcctcgacggagagtgttgc
cctgtgtgtctgcccatggacagtgaggacggctggtccccctggtcagagtggacagag
tgtactgtcacctgtgggacaggtactcaacagagaggacgctcatgtgatgccaccagt
aacccctgctctggaccatccatccagaccaggaaatgcagcctgggaaaatgtgacagc
cgagttcgtcaggatggtaggtggagcctgtggtctccatggtcatcatgttcggtgacc
tgtggcgagggtcagatcaccaggatacgccactgcaacgcccccacaccacaactgggg
ggcaaagactgtgatggccaggggagagtgacacagcgctgtgaggccaagccctgtccc
attgacggtggttggggaccgtggtcgccatgggcgatctgctcggcaacctgtgggggt
ggagttaagggtcggacccgtgtctgtaacagccccgaaccccagtacggaggccagaag
tgccccggggagaccaacgacagtaacgcctgcaacaaacaggactgccctatcgacggc
tgtctgtctaacccatgctttgggggagtggactgtaacagcggctctgatggatcctgg
gagtgtggaccctgcccccttggtttccgtggcaacggcacccactgtgacgatgtcaac
gagtgtgacattgtgtcagatgtctgctttaaagcaggtggagcattgcgttgcgtcaac
acagacccagggttccactgtctggcctgcccaccccgctacaagggaacacagcccttc
ggtgtgggggtggaggctgccagcaagaacaaacaggtttgcgagccagagaacccctgc
aaagacaagactcacaactgtcaccgttcagctgagtgtatctaccttagccacttcagt
gaccccatgtataagtgtgagtgtaggataggctatgccggggatggcttcatctgtgga
gaggactctgacctagacggatggcccaatcagaacctagtgtgtggcgccaacgccacc
tatcattgcaggaaggataactgccccaacctacctaactctggacaagaggactttgac
aaagacggccagggagatgcttgcgacaaggatgatgacaatgatgcaattgtggatgag
agagacaactgtcctctcctgtataaccccagacagtttgactttgataaagatgatgtg
ggtgaccgttgtgataactgcccctacgaacacaaccctgcccagattgacactgaccac
aacggcgaaggagatgcctgtgctgtcgacattgatggagatgaaatcccaaatgagcaa
gacaactgtccgtacgtgtacaacaatgaccaaaaggacactgacatggatagagtgggt
gaccagtgtgacaactgtcctctactacacaaccctgaccaggctgacacagacaatgac
ctagtaggagaccagtgtgacaacaaccaggacattgatgaagacggtcaccagaacaac
ctggacaactgtccttatgtggccaactccaaccaggcagaccacgataaggacggcaaa
ggggacgcctgtgacttcgacgatgacaatgatggtatccctgacgatagagacaactgt
agattgacgcccaacaaagatcaactggacactgatggcgacggtagaggagacgcctgc
aaagacgactttgacaacgacaacatcccggacatccttgacgtgtgtcctgagaacaac
gccgtcagcgtcacaaacttccggaagtttcagatggtgcacctggaccccaagggaacc
acgcagatcgaccccaactgggtggttaggcatcagggcaaggagctggtgcagaccgtc
aactctgaccctggcatcgctgttggctttgatgagttcaacgcggtggacttcagcggt
acgttctatgtgaacacggaccgggatgacgactacgctggtttcgtgttcggctaccag
tcgagcggccgcttctacgtggtgatgtggaagcagatcactcagacctactgggaagac
aaaccctccaaggccttcggtatctctggtgtctccctgaaggtggtcaattcaaccaca
ggcacaggggagaacctgagaaacgccctgtggcacacaggcaacactaaagatcaggtg
cgcactctttggcacgatcccaaaaacattggctggaaggattacacagcctacaggtgg
cacctcatccacagacccaagactggtttcatcagggttgtggtttatgaagggaaacag
atcttggcagactcaggaccagtgtacgacaagacgtttgctggaggacggttaggcctg
tttgtgttctcccaggaactggtcttcttctccgatctcaaatacgagtgcagagatgag
ctggagtttccaactgtgttgtccatcagataa
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